Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1685 and Dshi_1686 are separated by 10 nucleotides Dshi_1686 and Dshi_1687 are separated by 127 nucleotides Dshi_1687 and Dshi_1688 are separated by 189 nucleotides
Dshi_1685: Dshi_1685 - Radical SAM domain protein (RefSeq), at 1,754,813 to 1,755,757
_1685
Dshi_1686: Dshi_1686 - transglutaminase domain protein (RefSeq), at 1,755,768 to 1,756,544
_1686
Dshi_1687: Dshi_1687 - HNH endonuclease (RefSeq), at 1,756,672 to 1,757,268
_1687
Dshi_1688: Dshi_1688 - phospholipase/Carboxylesterase (RefSeq), at 1,757,458 to 1,758,129
_1688
Position (kb)
1755
1756
1757 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 1754.878 kb on - strand at 1754.930 kb on - strand, within Dshi_1685 at 1754.986 kb on - strand, within Dshi_1685 at 1754.992 kb on + strand, within Dshi_1685 at 1755.001 kb on - strand, within Dshi_1685 at 1755.001 kb on - strand, within Dshi_1685 at 1755.054 kb on - strand, within Dshi_1685 at 1755.115 kb on + strand, within Dshi_1685 at 1755.138 kb on + strand, within Dshi_1685 at 1755.255 kb on - strand, within Dshi_1685 at 1755.421 kb on + strand, within Dshi_1685 at 1755.461 kb on - strand, within Dshi_1685 at 1755.498 kb on + strand, within Dshi_1685 at 1755.728 kb on + strand at 1755.856 kb on + strand, within Dshi_1686 at 1755.925 kb on + strand, within Dshi_1686 at 1756.017 kb on - strand, within Dshi_1686 at 1756.161 kb on - strand, within Dshi_1686 at 1756.182 kb on - strand, within Dshi_1686 at 1756.323 kb on - strand, within Dshi_1686 at 1756.323 kb on - strand, within Dshi_1686 at 1756.334 kb on + strand, within Dshi_1686 at 1756.352 kb on - strand, within Dshi_1686 at 1756.492 kb on + strand at 1756.539 kb on - strand at 1756.723 kb on - strand at 1756.791 kb on + strand, within Dshi_1687 at 1756.795 kb on - strand, within Dshi_1687 at 1756.805 kb on + strand, within Dshi_1687 at 1756.811 kb on - strand, within Dshi_1687 at 1756.895 kb on - strand, within Dshi_1687 at 1756.897 kb on + strand, within Dshi_1687 at 1756.926 kb on - strand, within Dshi_1687 at 1757.007 kb on - strand, within Dshi_1687 at 1757.071 kb on - strand, within Dshi_1687 at 1757.129 kb on - strand, within Dshi_1687 at 1757.360 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,754,878 - -2.6 1,754,930 - Dshi_1685 0.12 +1.2 1,754,986 - Dshi_1685 0.18 -0.8 1,754,992 + Dshi_1685 0.19 -0.1 1,755,001 - Dshi_1685 0.20 +1.6 1,755,001 - Dshi_1685 0.20 +2.0 1,755,054 - Dshi_1685 0.26 -0.3 1,755,115 + Dshi_1685 0.32 +1.1 1,755,138 + Dshi_1685 0.34 -1.9 1,755,255 - Dshi_1685 0.47 +1.5 1,755,421 + Dshi_1685 0.64 -0.7 1,755,461 - Dshi_1685 0.69 +0.4 1,755,498 + Dshi_1685 0.72 -1.2 1,755,728 + +1.2 1,755,856 + Dshi_1686 0.11 -1.5 1,755,925 + Dshi_1686 0.20 -0.8 1,756,017 - Dshi_1686 0.32 -0.1 1,756,161 - Dshi_1686 0.51 +1.7 1,756,182 - Dshi_1686 0.53 +3.0 1,756,323 - Dshi_1686 0.71 -1.6 1,756,323 - Dshi_1686 0.71 -0.8 1,756,334 + Dshi_1686 0.73 -2.6 1,756,352 - Dshi_1686 0.75 +0.5 1,756,492 + -1.1 1,756,539 - +0.5 1,756,723 - -1.6 1,756,791 + Dshi_1687 0.20 -0.2 1,756,795 - Dshi_1687 0.21 +0.2 1,756,805 + Dshi_1687 0.22 +0.8 1,756,811 - Dshi_1687 0.23 -1.8 1,756,895 - Dshi_1687 0.37 -3.2 1,756,897 + Dshi_1687 0.38 +1.1 1,756,926 - Dshi_1687 0.43 -0.0 1,757,007 - Dshi_1687 0.56 +0.4 1,757,071 - Dshi_1687 0.67 +1.0 1,757,129 - Dshi_1687 0.77 -1.4 1,757,360 + +1.4
Or see this region's nucleotide sequence