Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1616 and Dshi_1617 are separated by 3 nucleotides Dshi_1617 and Dshi_1618 are separated by 57 nucleotides Dshi_1618 and Dshi_1619 are separated by 51 nucleotides
Dshi_1616: Dshi_1616 - Beta-ketoacyl synthase (RefSeq), at 1,680,682 to 1,681,893
_1616
Dshi_1617: Dshi_1617 - phosphopantetheine-binding (RefSeq), at 1,681,897 to 1,682,166
_1617
Dshi_1618: Dshi_1618 - UDP-3-O-(3-hydroxymyristoyl) glucosamine N-acyltransferase (RefSeq), at 1,682,224 to 1,683,315
_1618
Dshi_1619: Dshi_1619 - Peptidoglycan-binding domain 1 protein (RefSeq), at 1,683,367 to 1,684,977
_1619
Position (kb)
1682
1683
1684 Strain fitness (log2 ratio)
-5
-4
-3
-2
-1
0
1
2 at 1681.227 kb on - strand, within Dshi_1616 at 1681.349 kb on - strand, within Dshi_1616 at 1681.364 kb on - strand, within Dshi_1616 at 1681.364 kb on - strand, within Dshi_1616 at 1681.395 kb on + strand, within Dshi_1616 at 1681.829 kb on - strand at 1681.829 kb on - strand at 1681.917 kb on + strand at 1682.049 kb on + strand, within Dshi_1617 at 1682.049 kb on + strand, within Dshi_1617 at 1682.107 kb on + strand, within Dshi_1617 at 1682.209 kb on - strand at 1683.392 kb on + strand at 1683.410 kb on - strand at 1683.433 kb on + strand at 1683.667 kb on + strand, within Dshi_1619 at 1683.707 kb on - strand, within Dshi_1619 at 1683.768 kb on + strand, within Dshi_1619 at 1683.794 kb on + strand, within Dshi_1619 at 1683.836 kb on - strand, within Dshi_1619 at 1683.865 kb on + strand, within Dshi_1619 at 1683.883 kb on + strand, within Dshi_1619 at 1684.025 kb on + strand, within Dshi_1619 at 1684.098 kb on - strand, within Dshi_1619 at 1684.172 kb on - strand, within Dshi_1619 at 1684.237 kb on + strand, within Dshi_1619 at 1684.245 kb on - strand, within Dshi_1619
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,681,227 - Dshi_1616 0.45 -1.3 1,681,349 - Dshi_1616 0.55 +2.1 1,681,364 - Dshi_1616 0.56 -1.1 1,681,364 - Dshi_1616 0.56 +0.8 1,681,395 + Dshi_1616 0.59 -1.0 1,681,829 - -1.2 1,681,829 - -1.6 1,681,917 + +0.2 1,682,049 + Dshi_1617 0.56 -0.2 1,682,049 + Dshi_1617 0.56 -4.8 1,682,107 + Dshi_1617 0.78 -0.0 1,682,209 - -1.2 1,683,392 + +0.7 1,683,410 - -0.1 1,683,433 + +0.3 1,683,667 + Dshi_1619 0.19 -0.2 1,683,707 - Dshi_1619 0.21 +1.6 1,683,768 + Dshi_1619 0.25 -0.3 1,683,794 + Dshi_1619 0.27 -0.3 1,683,836 - Dshi_1619 0.29 -0.1 1,683,865 + Dshi_1619 0.31 +0.4 1,683,883 + Dshi_1619 0.32 +0.3 1,684,025 + Dshi_1619 0.41 -0.1 1,684,098 - Dshi_1619 0.45 -0.7 1,684,172 - Dshi_1619 0.50 -0.2 1,684,237 + Dshi_1619 0.54 +1.7 1,684,245 - Dshi_1619 0.55 -0.0
Or see this region's nucleotide sequence