Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1486
Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.02 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,541,558 | + | Dshi_1485 | 0.77 | -0.3 | |
1,541,658 | + | Dshi_1485 | 0.81 | +2.2 | |
1,541,671 | + | Dshi_1485 | 0.82 | -0.9 | |
1,541,717 | + | Dshi_1485 | 0.84 | -1.6 | |
1,541,738 | + | Dshi_1485 | 0.84 | +1.8 | |
1,541,804 | + | Dshi_1485 | 0.87 | +1.7 | |
1,541,804 | + | Dshi_1485 | 0.87 | -3.4 | |
1,541,868 | - | Dshi_1485 | 0.90 | +0.3 | |
1,542,067 | + | -1.9 | |||
1,542,067 | + | -1.1 | |||
1,542,096 | + | +0.1 | |||
1,542,281 | + | +0.4 | |||
1,542,281 | - | -1.0 | |||
1,542,344 | + | +0.0 | |||
1,542,390 | + | +2.7 | |||
1,542,509 | + | Dshi_1486 | 0.11 | -1.6 | |
1,542,855 | - | Dshi_1486 | 0.30 | -0.9 | |
1,543,157 | - | Dshi_1486 | 0.46 | -0.4 | |
1,543,358 | - | Dshi_1486 | 0.57 | -0.5 | |
1,543,634 | + | Dshi_1486 | 0.72 | -1.8 | |
1,543,780 | - | Dshi_1486 | 0.80 | -0.2 | |
1,543,900 | + | Dshi_1486 | 0.86 | -0.9 | |
1,544,053 | - | +1.1 | |||
1,544,084 | + | -1.5 | |||
1,544,090 | + | -0.8 | |||
1,544,183 | + | -1.7 | |||
1,544,183 | + | +0.1 | |||
1,544,249 | - | -0.9 | |||
1,544,693 | - | Dshi_1487 | 0.13 | -1.2 | |
1,544,812 | + | Dshi_1487 | 0.18 | -0.4 | |
1,544,858 | - | Dshi_1487 | 0.20 | -1.2 | |
1,545,069 | - | Dshi_1487 | 0.31 | -0.8 |
Or see this region's nucleotide sequence