Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1486

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1485 and Dshi_1486 are separated by 181 nucleotidesDshi_1486 and Dshi_1487 are separated by 270 nucleotides Dshi_1485: Dshi_1485 - FAD dependent oxidoreductase (RefSeq), at 1,539,700 to 1,542,114 _1485 Dshi_1486: Dshi_1486 - BCCT transporter (RefSeq), at 1,542,296 to 1,544,161 _1486 Dshi_1487: Dshi_1487 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 1,544,432 to 1,546,513 _1487 Position (kb) 1542 1543 1544 1545Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1541.558 kb on + strand, within Dshi_1485at 1541.658 kb on + strand, within Dshi_1485at 1541.671 kb on + strand, within Dshi_1485at 1541.717 kb on + strand, within Dshi_1485at 1541.738 kb on + strand, within Dshi_1485at 1541.804 kb on + strand, within Dshi_1485at 1541.804 kb on + strand, within Dshi_1485at 1541.868 kb on - strand, within Dshi_1485at 1542.067 kb on + strandat 1542.067 kb on + strandat 1542.096 kb on + strandat 1542.281 kb on + strandat 1542.281 kb on - strandat 1542.344 kb on + strandat 1542.390 kb on + strandat 1542.509 kb on + strand, within Dshi_1486at 1542.855 kb on - strand, within Dshi_1486at 1543.157 kb on - strand, within Dshi_1486at 1543.358 kb on - strand, within Dshi_1486at 1543.634 kb on + strand, within Dshi_1486at 1543.780 kb on - strand, within Dshi_1486at 1543.900 kb on + strand, within Dshi_1486at 1544.053 kb on - strandat 1544.084 kb on + strandat 1544.090 kb on + strandat 1544.183 kb on + strandat 1544.183 kb on + strandat 1544.249 kb on - strandat 1544.693 kb on - strand, within Dshi_1487at 1544.812 kb on + strand, within Dshi_1487at 1544.858 kb on - strand, within Dshi_1487at 1545.069 kb on - strand, within Dshi_1487

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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1,541,558 + Dshi_1485 0.77 -0.3
1,541,658 + Dshi_1485 0.81 +2.2
1,541,671 + Dshi_1485 0.82 -0.9
1,541,717 + Dshi_1485 0.84 -1.6
1,541,738 + Dshi_1485 0.84 +1.8
1,541,804 + Dshi_1485 0.87 +1.7
1,541,804 + Dshi_1485 0.87 -3.4
1,541,868 - Dshi_1485 0.90 +0.3
1,542,067 + -1.9
1,542,067 + -1.1
1,542,096 + +0.1
1,542,281 + +0.4
1,542,281 - -1.0
1,542,344 + +0.0
1,542,390 + +2.7
1,542,509 + Dshi_1486 0.11 -1.6
1,542,855 - Dshi_1486 0.30 -0.9
1,543,157 - Dshi_1486 0.46 -0.4
1,543,358 - Dshi_1486 0.57 -0.5
1,543,634 + Dshi_1486 0.72 -1.8
1,543,780 - Dshi_1486 0.80 -0.2
1,543,900 + Dshi_1486 0.86 -0.9
1,544,053 - +1.1
1,544,084 + -1.5
1,544,090 + -0.8
1,544,183 + -1.7
1,544,183 + +0.1
1,544,249 - -0.9
1,544,693 - Dshi_1487 0.13 -1.2
1,544,812 + Dshi_1487 0.18 -0.4
1,544,858 - Dshi_1487 0.20 -1.2
1,545,069 - Dshi_1487 0.31 -0.8

Or see this region's nucleotide sequence