Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1479 and Dshi_1480 are separated by 393 nucleotides Dshi_1480 and Dshi_1481 are separated by 185 nucleotides Dshi_1481 and Dshi_1482 overlap by 4 nucleotides
Dshi_1479: Dshi_1479 - Exopolysaccharide synthesis ExoD (RefSeq), at 1,534,029 to 1,534,640
_1479
Dshi_1480: Dshi_1480 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 1,535,034 to 1,536,077
_1480
Dshi_1481: Dshi_1481 - hypothetical protein (RefSeq), at 1,536,263 to 1,536,844
_1481
Dshi_1482: Dshi_1482 - TRAP dicarboxylate transporter, DctM subunit (RefSeq), at 1,536,841 to 1,538,193
_1482
Position (kb)
1535
1536
1537 Strain fitness (log2 ratio)
-2
-1
0
1
2 at 1534.735 kb on - strand at 1535.053 kb on - strand at 1535.073 kb on + strand at 1535.084 kb on + strand at 1535.143 kb on + strand, within Dshi_1480 at 1535.300 kb on + strand, within Dshi_1480 at 1535.366 kb on + strand, within Dshi_1480 at 1535.451 kb on + strand, within Dshi_1480 at 1535.455 kb on - strand, within Dshi_1480 at 1535.484 kb on - strand, within Dshi_1480 at 1535.484 kb on - strand, within Dshi_1480 at 1535.533 kb on + strand, within Dshi_1480 at 1535.551 kb on - strand, within Dshi_1480 at 1535.589 kb on - strand, within Dshi_1480 at 1535.747 kb on - strand, within Dshi_1480 at 1535.851 kb on - strand, within Dshi_1480 at 1535.890 kb on - strand, within Dshi_1480 at 1535.979 kb on + strand at 1535.987 kb on - strand at 1536.033 kb on - strand at 1536.084 kb on + strand at 1536.161 kb on + strand at 1536.218 kb on - strand at 1536.282 kb on - strand at 1536.320 kb on + strand at 1536.754 kb on + strand, within Dshi_1481 at 1536.794 kb on + strand at 1536.848 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,534,735 - -2.2 1,535,053 - -0.6 1,535,073 + -1.5 1,535,084 + +1.4 1,535,143 + Dshi_1480 0.10 -0.9 1,535,300 + Dshi_1480 0.25 -1.6 1,535,366 + Dshi_1480 0.32 -1.2 1,535,451 + Dshi_1480 0.40 +0.1 1,535,455 - Dshi_1480 0.40 -0.1 1,535,484 - Dshi_1480 0.43 -0.5 1,535,484 - Dshi_1480 0.43 -0.6 1,535,533 + Dshi_1480 0.48 -1.3 1,535,551 - Dshi_1480 0.50 -1.9 1,535,589 - Dshi_1480 0.53 +0.1 1,535,747 - Dshi_1480 0.68 +0.1 1,535,851 - Dshi_1480 0.78 +0.6 1,535,890 - Dshi_1480 0.82 -0.7 1,535,979 + -0.9 1,535,987 - +2.1 1,536,033 - -0.9 1,536,084 + -2.0 1,536,161 + -0.9 1,536,218 - +2.5 1,536,282 - -0.5 1,536,320 + -0.5 1,536,754 + Dshi_1481 0.84 +2.4 1,536,794 + +1.0 1,536,848 + -0.4
Or see this region's nucleotide sequence