Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1224
Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.
Per-strain Table
Position | Strand | Gene | LocusTag | Fraction | m.b. A22 0.02 mg/ml |
---|---|---|---|---|---|
remove | |||||
1,266,082 | - | Dshi_1223 | 0.70 | +1.9 | |
1,266,186 | + | Dshi_1223 | 0.74 | -0.7 | |
1,266,311 | - | Dshi_1223 | 0.79 | -3.0 | |
1,266,331 | - | Dshi_1223 | 0.80 | +0.3 | |
1,266,337 | - | Dshi_1223 | 0.80 | +3.1 | |
1,266,413 | + | Dshi_1223 | 0.83 | +1.3 | |
1,266,430 | - | Dshi_1223 | 0.83 | -1.5 | |
1,266,475 | + | Dshi_1223 | 0.85 | +0.3 | |
1,266,727 | - | -2.1 | |||
1,266,801 | + | +0.3 | |||
1,266,809 | - | -2.2 | |||
1,266,909 | + | -1.0 | |||
1,267,243 | + | Dshi_1224 | 0.35 | +0.7 | |
1,267,266 | + | +0.3 | |||
1,267,276 | + | Dshi_1224 | 0.42 | +0.3 | |
1,267,313 | - | Dshi_1224 | 0.49 | -0.5 | |
1,267,365 | + | Dshi_1224 | 0.59 | -3.0 | |
1,267,399 | - | Dshi_1224 | 0.66 | +1.3 | |
1,267,408 | + | Dshi_1224 | 0.67 | -0.8 | |
1,267,859 | + | Dshi_1225 | 0.18 | +2.7 | |
1,267,871 | - | Dshi_1225 | 0.18 | -0.3 | |
1,267,881 | + | Dshi_1225 | 0.19 | +1.3 | |
1,267,901 | + | Dshi_1225 | 0.20 | +0.3 | |
1,267,970 | - | Dshi_1225 | 0.25 | -0.7 | |
1,268,076 | + | Dshi_1225 | 0.32 | -1.0 | |
1,268,115 | + | Dshi_1225 | 0.34 | -2.0 | |
1,268,212 | + | Dshi_1225 | 0.41 | +1.3 | |
1,268,214 | - | Dshi_1225 | 0.41 | +0.3 | |
1,268,341 | + | Dshi_1225 | 0.49 | -1.7 | |
1,268,521 | + | Dshi_1225 | 0.61 | -1.3 |
Or see this region's nucleotide sequence