Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_1224

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_1223 and Dshi_1224 are separated by 207 nucleotidesDshi_1224 and Dshi_1225 are separated by 10 nucleotides Dshi_1223: Dshi_1223 - aminopeptidase N (RefSeq), at 1,264,297 to 1,266,852 _1223 Dshi_1224: Dshi_1224 - hypothetical protein (RefSeq), at 1,267,060 to 1,267,575 _1224 Dshi_1225: Dshi_1225 - Deoxyribodipyrimidine photo-lyase (RefSeq), at 1,267,586 to 1,269,130 _1225 Position (kb) 1267 1268Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 1266.082 kb on - strand, within Dshi_1223at 1266.186 kb on + strand, within Dshi_1223at 1266.311 kb on - strand, within Dshi_1223at 1266.331 kb on - strand, within Dshi_1223at 1266.337 kb on - strand, within Dshi_1223at 1266.413 kb on + strand, within Dshi_1223at 1266.430 kb on - strand, within Dshi_1223at 1266.475 kb on + strand, within Dshi_1223at 1266.727 kb on - strandat 1266.801 kb on + strandat 1266.809 kb on - strandat 1266.909 kb on + strandat 1267.243 kb on + strand, within Dshi_1224at 1267.266 kb on + strandat 1267.276 kb on + strand, within Dshi_1224at 1267.313 kb on - strand, within Dshi_1224at 1267.365 kb on + strand, within Dshi_1224at 1267.399 kb on - strand, within Dshi_1224at 1267.408 kb on + strand, within Dshi_1224at 1267.859 kb on + strand, within Dshi_1225at 1267.871 kb on - strand, within Dshi_1225at 1267.881 kb on + strand, within Dshi_1225at 1267.901 kb on + strand, within Dshi_1225at 1267.970 kb on - strand, within Dshi_1225at 1268.076 kb on + strand, within Dshi_1225at 1268.115 kb on + strand, within Dshi_1225at 1268.212 kb on + strand, within Dshi_1225at 1268.214 kb on - strand, within Dshi_1225at 1268.341 kb on + strand, within Dshi_1225at 1268.521 kb on + strand, within Dshi_1225

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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1,266,082 - Dshi_1223 0.70 +1.9
1,266,186 + Dshi_1223 0.74 -0.7
1,266,311 - Dshi_1223 0.79 -3.0
1,266,331 - Dshi_1223 0.80 +0.3
1,266,337 - Dshi_1223 0.80 +3.1
1,266,413 + Dshi_1223 0.83 +1.3
1,266,430 - Dshi_1223 0.83 -1.5
1,266,475 + Dshi_1223 0.85 +0.3
1,266,727 - -2.1
1,266,801 + +0.3
1,266,809 - -2.2
1,266,909 + -1.0
1,267,243 + Dshi_1224 0.35 +0.7
1,267,266 + +0.3
1,267,276 + Dshi_1224 0.42 +0.3
1,267,313 - Dshi_1224 0.49 -0.5
1,267,365 + Dshi_1224 0.59 -3.0
1,267,399 - Dshi_1224 0.66 +1.3
1,267,408 + Dshi_1224 0.67 -0.8
1,267,859 + Dshi_1225 0.18 +2.7
1,267,871 - Dshi_1225 0.18 -0.3
1,267,881 + Dshi_1225 0.19 +1.3
1,267,901 + Dshi_1225 0.20 +0.3
1,267,970 - Dshi_1225 0.25 -0.7
1,268,076 + Dshi_1225 0.32 -1.0
1,268,115 + Dshi_1225 0.34 -2.0
1,268,212 + Dshi_1225 0.41 +1.3
1,268,214 - Dshi_1225 0.41 +0.3
1,268,341 + Dshi_1225 0.49 -1.7
1,268,521 + Dshi_1225 0.61 -1.3

Or see this region's nucleotide sequence