Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_1155 and Dshi_1156 are separated by 137 nucleotides Dshi_1156 and Dshi_1157 are separated by 84 nucleotides Dshi_1157 and Dshi_1158 are separated by 49 nucleotides
Dshi_1155: Dshi_1155 - uroporphyrin-III C-methyltransferase (RefSeq), at 1,180,655 to 1,182,040
_1155
Dshi_1156: Dshi_1156 - transcriptional regulator, AsnC family (RefSeq), at 1,182,178 to 1,182,645
_1156
Dshi_1157: Dshi_1157 - protein of unknown function UPF0061 (RefSeq), at 1,182,730 to 1,184,175
_1157
Dshi_1158: Dshi_1158 - Inosine/uridine-preferring nucleoside hydrolase (RefSeq), at 1,184,225 to 1,185,181
_1158
Position (kb)
1182
1183
1184
1185 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 1182.658 kb on + strand at 1182.926 kb on + strand, within Dshi_1157 at 1182.991 kb on - strand, within Dshi_1157 at 1183.210 kb on + strand, within Dshi_1157 at 1183.246 kb on + strand, within Dshi_1157 at 1183.246 kb on + strand, within Dshi_1157 at 1183.254 kb on - strand, within Dshi_1157 at 1183.280 kb on + strand, within Dshi_1157 at 1183.364 kb on + strand, within Dshi_1157 at 1183.543 kb on - strand, within Dshi_1157 at 1183.550 kb on - strand, within Dshi_1157 at 1183.748 kb on - strand, within Dshi_1157 at 1183.790 kb on - strand, within Dshi_1157 at 1183.954 kb on + strand, within Dshi_1157 at 1183.962 kb on - strand, within Dshi_1157 at 1184.095 kb on + strand at 1184.223 kb on + strand at 1184.223 kb on + strand at 1184.325 kb on - strand, within Dshi_1158 at 1184.399 kb on - strand, within Dshi_1158 at 1184.438 kb on + strand, within Dshi_1158 at 1184.650 kb on + strand, within Dshi_1158 at 1184.782 kb on + strand, within Dshi_1158 at 1184.815 kb on + strand, within Dshi_1158 at 1184.876 kb on - strand, within Dshi_1158 at 1184.887 kb on + strand, within Dshi_1158 at 1184.990 kb on + strand, within Dshi_1158 at 1185.163 kb on + strand at 1185.163 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 1,182,658 + -2.0 1,182,926 + Dshi_1157 0.14 -0.6 1,182,991 - Dshi_1157 0.18 -0.9 1,183,210 + Dshi_1157 0.33 +0.7 1,183,246 + Dshi_1157 0.36 +0.3 1,183,246 + Dshi_1157 0.36 -1.2 1,183,254 - Dshi_1157 0.36 -3.7 1,183,280 + Dshi_1157 0.38 -1.2 1,183,364 + Dshi_1157 0.44 +0.3 1,183,543 - Dshi_1157 0.56 -1.1 1,183,550 - Dshi_1157 0.57 +0.3 1,183,748 - Dshi_1157 0.70 -0.6 1,183,790 - Dshi_1157 0.73 -1.0 1,183,954 + Dshi_1157 0.85 +0.3 1,183,962 - Dshi_1157 0.85 +0.5 1,184,095 + +2.1 1,184,223 + +0.3 1,184,223 + -0.2 1,184,325 - Dshi_1158 0.10 +0.3 1,184,399 - Dshi_1158 0.18 +0.9 1,184,438 + Dshi_1158 0.22 -0.2 1,184,650 + Dshi_1158 0.44 -0.7 1,184,782 + Dshi_1158 0.58 +0.3 1,184,815 + Dshi_1158 0.62 +2.3 1,184,876 - Dshi_1158 0.68 -0.2 1,184,887 + Dshi_1158 0.69 +1.9 1,184,990 + Dshi_1158 0.80 -3.2 1,185,163 + -0.4 1,185,163 + +2.2
Or see this region's nucleotide sequence