Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0939 and Dshi_0940 are separated by 109 nucleotides Dshi_0940 and Dshi_0941 are separated by 329 nucleotides Dshi_0941 and Dshi_0942 overlap by 4 nucleotides
Dshi_0939: Dshi_0939 - transposase orfA IS5 family element (RefSeq), at 965,791 to 965,877
_0939
Dshi_0940: Dshi_0940 - hypothetical protein (RefSeq), at 965,987 to 966,301
_0940
Dshi_0941: Dshi_0941 - hypothetical protein (RefSeq), at 966,631 to 967,482
_0941
Dshi_0942: Dshi_0942 - peptidase M23B (RefSeq), at 967,479 to 968,444
_0942
Position (kb) 966
967
968 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2 at 965.699 kb on + strand at 965.705 kb on + strand at 965.718 kb on - strand at 965.720 kb on - strand at 965.720 kb on - strand at 965.756 kb on + strand at 965.816 kb on - strand, within Dshi_0939 at 965.844 kb on - strand, within Dshi_0939 at 965.973 kb on + strand at 965.994 kb on + strand at 966.027 kb on + strand, within Dshi_0940 at 966.027 kb on + strand, within Dshi_0940 at 966.032 kb on + strand, within Dshi_0940 at 966.034 kb on + strand, within Dshi_0940 at 966.042 kb on - strand, within Dshi_0940 at 966.042 kb on - strand, within Dshi_0940 at 966.042 kb on - strand, within Dshi_0940 at 966.042 kb on - strand, within Dshi_0940 at 966.042 kb on - strand, within Dshi_0940 at 966.047 kb on - strand, within Dshi_0940 at 966.057 kb on - strand, within Dshi_0940 at 966.057 kb on - strand, within Dshi_0940 at 966.063 kb on + strand, within Dshi_0940 at 966.094 kb on - strand, within Dshi_0940 at 966.094 kb on - strand, within Dshi_0940 at 966.152 kb on + strand, within Dshi_0940 at 966.161 kb on - strand, within Dshi_0940 at 966.169 kb on - strand, within Dshi_0940 at 966.203 kb on + strand, within Dshi_0940 at 966.211 kb on - strand, within Dshi_0940 at 966.212 kb on - strand, within Dshi_0940 at 966.281 kb on + strand at 966.304 kb on - strand at 966.339 kb on + strand at 966.347 kb on - strand at 966.401 kb on - strand at 966.419 kb on - strand at 966.424 kb on + strand at 966.432 kb on - strand at 966.466 kb on - strand at 966.484 kb on + strand at 966.491 kb on - strand at 966.516 kb on - strand at 966.581 kb on + strand at 966.589 kb on - strand at 966.653 kb on + strand at 966.657 kb on + strand at 966.682 kb on - strand at 966.687 kb on - strand at 966.691 kb on - strand at 966.861 kb on - strand, within Dshi_0941 at 966.861 kb on - strand, within Dshi_0941 at 966.861 kb on - strand, within Dshi_0941 at 966.861 kb on - strand, within Dshi_0941 at 966.863 kb on + strand, within Dshi_0941 at 966.899 kb on - strand, within Dshi_0941 at 966.935 kb on + strand, within Dshi_0941 at 966.972 kb on - strand, within Dshi_0941 at 967.129 kb on + strand, within Dshi_0941 at 967.251 kb on + strand, within Dshi_0941 at 967.332 kb on + strand, within Dshi_0941 at 967.399 kb on + strand at 967.541 kb on + strand at 967.575 kb on - strand at 967.708 kb on + strand, within Dshi_0942 at 967.708 kb on + strand, within Dshi_0942 at 967.713 kb on + strand, within Dshi_0942 at 967.751 kb on + strand, within Dshi_0942 at 967.858 kb on + strand, within Dshi_0942 at 967.879 kb on + strand, within Dshi_0942 at 967.879 kb on + strand, within Dshi_0942 at 967.889 kb on + strand, within Dshi_0942 at 967.936 kb on + strand, within Dshi_0942 at 967.987 kb on - strand, within Dshi_0942 at 968.025 kb on + strand, within Dshi_0942 at 968.025 kb on + strand, within Dshi_0942 at 968.066 kb on + strand, within Dshi_0942 at 968.198 kb on + strand, within Dshi_0942 at 968.347 kb on - strand, within Dshi_0942
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 965,699 + +0.9 965,705 + -0.3 965,718 - -0.7 965,720 - +0.0 965,720 - -1.6 965,756 + -1.6 965,816 - Dshi_0939 0.29 -2.8 965,844 - Dshi_0939 0.61 -0.4 965,973 + -0.6 965,994 + +1.4 966,027 + Dshi_0940 0.13 -2.6 966,027 + Dshi_0940 0.13 -2.6 966,032 + Dshi_0940 0.14 -2.2 966,034 + Dshi_0940 0.15 +0.2 966,042 - Dshi_0940 0.17 -1.4 966,042 - Dshi_0940 0.17 +2.7 966,042 - Dshi_0940 0.17 -1.2 966,042 - Dshi_0940 0.17 -1.6 966,042 - Dshi_0940 0.17 +0.2 966,047 - Dshi_0940 0.19 -0.8 966,057 - Dshi_0940 0.22 +0.4 966,057 - Dshi_0940 0.22 -2.4 966,063 + Dshi_0940 0.24 -1.6 966,094 - Dshi_0940 0.34 -1.2 966,094 - Dshi_0940 0.34 -2.8 966,152 + Dshi_0940 0.52 +0.0 966,161 - Dshi_0940 0.55 -0.2 966,169 - Dshi_0940 0.58 +0.4 966,203 + Dshi_0940 0.69 +1.3 966,211 - Dshi_0940 0.71 +0.4 966,212 - Dshi_0940 0.71 -2.6 966,281 + +0.2 966,304 - +0.0 966,339 + +0.4 966,347 - -1.2 966,401 - -0.5 966,419 - -0.9 966,424 + -1.0 966,432 - -1.6 966,466 - -0.6 966,484 + -0.6 966,491 - -0.4 966,516 - +0.8 966,581 + -0.6 966,589 - -2.4 966,653 + -0.7 966,657 + +0.4 966,682 - +0.4 966,687 - +1.2 966,691 - -1.9 966,861 - Dshi_0941 0.27 -2.2 966,861 - Dshi_0941 0.27 +0.6 966,861 - Dshi_0941 0.27 -0.9 966,861 - Dshi_0941 0.27 -0.3 966,863 + Dshi_0941 0.27 -1.2 966,899 - Dshi_0941 0.31 -1.9 966,935 + Dshi_0941 0.36 -0.8 966,972 - Dshi_0941 0.40 -0.9 967,129 + Dshi_0941 0.58 -1.4 967,251 + Dshi_0941 0.73 -3.8 967,332 + Dshi_0941 0.82 -0.4 967,399 + +0.5 967,541 + -1.9 967,575 - +0.9 967,708 + Dshi_0942 0.24 -3.3 967,708 + Dshi_0942 0.24 -1.6 967,713 + Dshi_0942 0.24 -0.2 967,751 + Dshi_0942 0.28 +0.1 967,858 + Dshi_0942 0.39 -1.1 967,879 + Dshi_0942 0.41 -2.6 967,879 + Dshi_0942 0.41 -0.2 967,889 + Dshi_0942 0.42 +0.2 967,936 + Dshi_0942 0.47 -0.4 967,987 - Dshi_0942 0.53 -1.4 968,025 + Dshi_0942 0.57 -1.0 968,025 + Dshi_0942 0.57 +0.4 968,066 + Dshi_0942 0.61 -0.6 968,198 + Dshi_0942 0.74 -0.3 968,347 - Dshi_0942 0.90 +1.2
Or see this region's nucleotide sequence