Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0919

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0918 and Dshi_0919 overlap by 4 nucleotidesDshi_0919 and Dshi_0920 overlap by 4 nucleotidesDshi_0920 and Dshi_0921 are separated by 22 nucleotides Dshi_0918: Dshi_0918 - Auxin Efflux Carrier (RefSeq), at 942,472 to 943,404 _0918 Dshi_0919: Dshi_0919 - beta-lactamase domain protein (RefSeq), at 943,401 to 944,207 _0919 Dshi_0920: Dshi_0920 - hydrolase, TatD family (RefSeq), at 944,204 to 945,013 _0920 Dshi_0921: Dshi_0921 - DNA-directed DNA polymerase (RefSeq), at 945,036 to 946,181 _0921 Position (kb) 943 944 945Strain fitness (log2 ratio) -2 -1 0 1 2 3at 942.425 kb on - strandat 942.478 kb on - strandat 942.580 kb on + strand, within Dshi_0918at 942.702 kb on + strand, within Dshi_0918at 942.761 kb on + strand, within Dshi_0918at 942.833 kb on + strand, within Dshi_0918at 942.901 kb on + strand, within Dshi_0918at 942.984 kb on + strand, within Dshi_0918at 943.055 kb on + strand, within Dshi_0918at 943.227 kb on - strand, within Dshi_0918at 943.227 kb on - strand, within Dshi_0918at 943.282 kb on + strand, within Dshi_0918at 943.559 kb on + strand, within Dshi_0919at 943.560 kb on + strand, within Dshi_0919at 943.560 kb on + strand, within Dshi_0919at 943.634 kb on - strand, within Dshi_0919at 943.656 kb on - strand, within Dshi_0919at 943.802 kb on - strand, within Dshi_0919at 943.866 kb on + strand, within Dshi_0919at 943.968 kb on + strand, within Dshi_0919at 943.976 kb on - strand, within Dshi_0919at 943.977 kb on - strand, within Dshi_0919at 943.989 kb on - strand, within Dshi_0919at 944.043 kb on - strand, within Dshi_0919at 944.426 kb on + strand, within Dshi_0920at 944.516 kb on - strand, within Dshi_0920at 944.559 kb on - strand, within Dshi_0920at 944.588 kb on - strand, within Dshi_0920at 944.742 kb on + strand, within Dshi_0920at 944.841 kb on - strand, within Dshi_0920at 945.017 kb on - strandat 945.071 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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942,425 - +0.4
942,478 - -1.8
942,580 + Dshi_0918 0.12 +0.8
942,702 + Dshi_0918 0.25 -0.2
942,761 + Dshi_0918 0.31 -0.9
942,833 + Dshi_0918 0.39 -1.9
942,901 + Dshi_0918 0.46 -0.7
942,984 + Dshi_0918 0.55 +0.3
943,055 + Dshi_0918 0.62 -0.5
943,227 - Dshi_0918 0.81 -1.7
943,227 - Dshi_0918 0.81 +2.0
943,282 + Dshi_0918 0.87 -0.0
943,559 + Dshi_0919 0.20 -0.7
943,560 + Dshi_0919 0.20 +0.4
943,560 + Dshi_0919 0.20 +2.4
943,634 - Dshi_0919 0.29 -0.7
943,656 - Dshi_0919 0.32 +0.6
943,802 - Dshi_0919 0.50 -1.9
943,866 + Dshi_0919 0.58 +3.4
943,968 + Dshi_0919 0.70 +0.1
943,976 - Dshi_0919 0.71 -1.2
943,977 - Dshi_0919 0.71 +0.4
943,989 - Dshi_0919 0.73 -1.7
944,043 - Dshi_0919 0.80 -0.7
944,426 + Dshi_0920 0.27 -0.6
944,516 - Dshi_0920 0.39 +0.5
944,559 - Dshi_0920 0.44 +2.2
944,588 - Dshi_0920 0.47 -0.3
944,742 + Dshi_0920 0.66 +0.4
944,841 - Dshi_0920 0.79 -0.5
945,017 - +2.4
945,071 - +3.2

Or see this region's nucleotide sequence