Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0908 and Dshi_0909 overlap by 4 nucleotides Dshi_0909 and Dshi_0910 overlap by 4 nucleotides Dshi_0910 and Dshi_0911 overlap by 4 nucleotides Dshi_0911 and Dshi_0912 overlap by 4 nucleotides
Dshi_0908: Dshi_0908 - transcriptional activator, TenA family (RefSeq), at 931,652 to 932,350
_0908
Dshi_0909: Dshi_0909 - NMT1/THI5 like domain protein (RefSeq), at 932,347 to 933,282
_0909
Dshi_0910: Dshi_0910 - UBA/THIF-type NAD/FAD binding protein (RefSeq), at 933,279 to 934,244
_0910
Dshi_0911: Dshi_0911 - Thiamine-phosphate diphosphorylase (RefSeq), at 934,241 to 934,840
_0911
Dshi_0912: Dshi_0912 - thiazole biosynthesis family protein (RefSeq), at 934,837 to 935,631
_0912
Position (kb) 933
934
935 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 932.446 kb on - strand, within Dshi_0909 at 932.644 kb on - strand, within Dshi_0909 at 932.651 kb on + strand, within Dshi_0909 at 932.659 kb on - strand, within Dshi_0909 at 932.688 kb on - strand, within Dshi_0909 at 932.821 kb on - strand, within Dshi_0909 at 932.888 kb on - strand, within Dshi_0909 at 933.202 kb on + strand at 933.210 kb on - strand at 933.215 kb on + strand at 933.250 kb on + strand at 933.258 kb on - strand at 933.384 kb on + strand, within Dshi_0910 at 933.446 kb on - strand, within Dshi_0910 at 933.452 kb on + strand, within Dshi_0910 at 933.488 kb on + strand, within Dshi_0910 at 933.489 kb on + strand, within Dshi_0910 at 933.497 kb on - strand, within Dshi_0910 at 933.645 kb on - strand, within Dshi_0910 at 933.715 kb on - strand, within Dshi_0910 at 933.867 kb on - strand, within Dshi_0910 at 934.109 kb on - strand, within Dshi_0910 at 934.125 kb on + strand, within Dshi_0910 at 934.133 kb on - strand, within Dshi_0910 at 934.215 kb on - strand at 934.281 kb on + strand at 934.676 kb on + strand, within Dshi_0911 at 934.761 kb on + strand, within Dshi_0911 at 935.087 kb on - strand, within Dshi_0912 at 935.127 kb on + strand, within Dshi_0912 at 935.169 kb on - strand, within Dshi_0912
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 932,446 - Dshi_0909 0.11 +1.0 932,644 - Dshi_0909 0.32 -0.6 932,651 + Dshi_0909 0.32 +3.2 932,659 - Dshi_0909 0.33 +1.4 932,688 - Dshi_0909 0.36 -2.7 932,821 - Dshi_0909 0.51 +3.0 932,888 - Dshi_0909 0.58 -1.0 933,202 + -2.2 933,210 - +0.0 933,215 + +0.4 933,250 + +0.8 933,258 - +0.4 933,384 + Dshi_0910 0.11 -0.7 933,446 - Dshi_0910 0.17 -0.6 933,452 + Dshi_0910 0.18 +0.4 933,488 + Dshi_0910 0.22 +0.4 933,489 + Dshi_0910 0.22 +0.1 933,497 - Dshi_0910 0.23 +2.4 933,645 - Dshi_0910 0.38 -0.7 933,715 - Dshi_0910 0.45 +0.4 933,867 - Dshi_0910 0.61 -1.0 934,109 - Dshi_0910 0.86 -2.4 934,125 + Dshi_0910 0.88 +0.4 934,133 - Dshi_0910 0.88 -0.6 934,215 - -3.7 934,281 + +0.4 934,676 + Dshi_0911 0.72 -0.2 934,761 + Dshi_0911 0.87 -1.9 935,087 - Dshi_0912 0.31 +0.8 935,127 + Dshi_0912 0.36 +0.8 935,169 - Dshi_0912 0.42 +1.4
Or see this region's nucleotide sequence