Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0889 and Dshi_0890 are separated by 106 nucleotides Dshi_0890 and Dshi_0891 are separated by 93 nucleotides
Dshi_0889: Dshi_0889 - alanine racemase domain protein (RefSeq), at 904,311 to 905,474
_0889
Dshi_0890: Dshi_0890 - Ornithine cyclodeaminase (RefSeq), at 905,581 to 906,573
_0890
Dshi_0891: Dshi_0891 - cysteine synthase A (RefSeq), at 906,667 to 907,749
_0891
Position (kb) 905
906
907 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 904.592 kb on - strand, within Dshi_0889 at 904.623 kb on + strand, within Dshi_0889 at 905.066 kb on + strand, within Dshi_0889 at 905.067 kb on + strand, within Dshi_0889 at 905.077 kb on + strand, within Dshi_0889 at 905.085 kb on - strand, within Dshi_0889 at 905.218 kb on + strand, within Dshi_0889 at 905.313 kb on - strand, within Dshi_0889 at 905.356 kb on - strand, within Dshi_0889 at 905.402 kb on - strand at 905.402 kb on - strand at 905.413 kb on - strand at 905.473 kb on - strand at 905.486 kb on + strand at 905.530 kb on + strand at 905.576 kb on + strand at 905.653 kb on + strand at 905.708 kb on - strand, within Dshi_0890 at 905.715 kb on - strand, within Dshi_0890 at 905.802 kb on - strand, within Dshi_0890 at 905.808 kb on + strand, within Dshi_0890 at 905.859 kb on + strand, within Dshi_0890 at 905.867 kb on - strand, within Dshi_0890 at 905.948 kb on + strand, within Dshi_0890 at 905.954 kb on - strand, within Dshi_0890 at 905.956 kb on - strand, within Dshi_0890 at 905.968 kb on - strand, within Dshi_0890 at 906.003 kb on + strand, within Dshi_0890 at 906.013 kb on + strand, within Dshi_0890 at 906.026 kb on + strand, within Dshi_0890 at 906.026 kb on - strand, within Dshi_0890 at 906.245 kb on + strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.258 kb on - strand, within Dshi_0890 at 906.281 kb on - strand, within Dshi_0890 at 906.324 kb on - strand, within Dshi_0890 at 906.468 kb on - strand, within Dshi_0890 at 906.501 kb on - strand at 906.512 kb on - strand at 906.747 kb on - strand at 906.755 kb on + strand at 906.776 kb on - strand, within Dshi_0891 at 907.089 kb on + strand, within Dshi_0891 at 907.097 kb on - strand, within Dshi_0891 at 907.187 kb on - strand, within Dshi_0891 at 907.189 kb on + strand, within Dshi_0891 at 907.194 kb on + strand, within Dshi_0891 at 907.244 kb on + strand, within Dshi_0891 at 907.310 kb on + strand, within Dshi_0891 at 907.323 kb on - strand, within Dshi_0891 at 907.400 kb on + strand, within Dshi_0891 at 907.448 kb on + strand, within Dshi_0891 at 907.455 kb on - strand, within Dshi_0891 at 907.468 kb on + strand, within Dshi_0891 at 907.468 kb on + strand, within Dshi_0891 at 907.477 kb on - strand, within Dshi_0891 at 907.526 kb on + strand, within Dshi_0891
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 904,592 - Dshi_0889 0.24 -0.4 904,623 + Dshi_0889 0.27 -1.2 905,066 + Dshi_0889 0.65 +0.3 905,067 + Dshi_0889 0.65 -2.9 905,077 + Dshi_0889 0.66 -1.0 905,085 - Dshi_0889 0.66 -0.5 905,218 + Dshi_0889 0.78 -1.2 905,313 - Dshi_0889 0.86 -0.1 905,356 - Dshi_0889 0.90 -0.2 905,402 - -1.0 905,402 - -0.1 905,413 - +1.0 905,473 - -2.2 905,486 + +1.7 905,530 + +1.4 905,576 + -0.2 905,653 + -0.6 905,708 - Dshi_0890 0.13 -0.3 905,715 - Dshi_0890 0.13 -1.1 905,802 - Dshi_0890 0.22 -1.3 905,808 + Dshi_0890 0.23 -1.2 905,859 + Dshi_0890 0.28 +2.0 905,867 - Dshi_0890 0.29 +0.3 905,948 + Dshi_0890 0.37 +1.1 905,954 - Dshi_0890 0.38 +2.4 905,956 - Dshi_0890 0.38 -0.7 905,968 - Dshi_0890 0.39 -1.5 906,003 + Dshi_0890 0.42 -0.6 906,013 + Dshi_0890 0.44 +1.4 906,026 + Dshi_0890 0.45 -1.2 906,026 - Dshi_0890 0.45 -0.8 906,245 + Dshi_0890 0.67 -0.2 906,258 - Dshi_0890 0.68 -2.5 906,258 - Dshi_0890 0.68 +2.0 906,258 - Dshi_0890 0.68 +2.0 906,281 - Dshi_0890 0.70 -3.5 906,324 - Dshi_0890 0.75 -0.7 906,468 - Dshi_0890 0.89 +2.4 906,501 - -2.2 906,512 - +0.4 906,747 - +0.4 906,755 + -1.6 906,776 - Dshi_0891 0.10 +2.2 907,089 + Dshi_0891 0.39 +0.1 907,097 - Dshi_0891 0.40 +1.4 907,187 - Dshi_0891 0.48 +3.0 907,189 + Dshi_0891 0.48 -0.2 907,194 + Dshi_0891 0.49 +1.7 907,244 + Dshi_0891 0.53 -0.1 907,310 + Dshi_0891 0.59 -0.6 907,323 - Dshi_0891 0.61 -0.7 907,400 + Dshi_0891 0.68 +2.0 907,448 + Dshi_0891 0.72 -1.9 907,455 - Dshi_0891 0.73 +0.4 907,468 + Dshi_0891 0.74 +0.4 907,468 + Dshi_0891 0.74 -1.1 907,477 - Dshi_0891 0.75 +2.0 907,526 + Dshi_0891 0.79 +0.0
Or see this region's nucleotide sequence