Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0882 and Dshi_0883 are separated by 4 nucleotides Dshi_0883 and Dshi_0884 are separated by 219 nucleotides Dshi_0884 and Dshi_0885 overlap by 4 nucleotides Dshi_0885 and Dshi_0886 are separated by 3 nucleotides
Dshi_0882: Dshi_0882 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 897,647 to 898,615
_0882
Dshi_0883: Dshi_0883 - hypothetical protein (RefSeq), at 898,620 to 898,811
_0883
Dshi_0884: Dshi_0884 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 899,031 to 900,113
_0884
Dshi_0885: Dshi_0885 - oligopeptide/dipeptide ABC transporter, ATPase subunit (RefSeq), at 900,110 to 901,078
_0885
Dshi_0886: Dshi_0886 - transcriptional regulator, IclR family (RefSeq), at 901,082 to 901,924
_0886
Position (kb) 899
900
901 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 898.031 kb on - strand, within Dshi_0882 at 898.065 kb on + strand, within Dshi_0882 at 898.228 kb on - strand, within Dshi_0882 at 898.262 kb on + strand, within Dshi_0882 at 898.317 kb on + strand, within Dshi_0882 at 898.351 kb on - strand, within Dshi_0882 at 898.562 kb on - strand at 898.653 kb on + strand, within Dshi_0883 at 898.653 kb on - strand, within Dshi_0883 at 898.822 kb on + strand at 898.869 kb on + strand at 899.024 kb on - strand at 899.064 kb on + strand at 899.151 kb on + strand, within Dshi_0884 at 899.328 kb on + strand, within Dshi_0884 at 899.437 kb on + strand, within Dshi_0884 at 899.515 kb on + strand, within Dshi_0884 at 899.550 kb on - strand, within Dshi_0884 at 899.589 kb on - strand, within Dshi_0884 at 899.757 kb on - strand, within Dshi_0884 at 899.765 kb on - strand, within Dshi_0884 at 899.785 kb on + strand at 899.815 kb on + strand, within Dshi_0884 at 899.846 kb on - strand, within Dshi_0884 at 899.957 kb on + strand, within Dshi_0884 at 900.076 kb on - strand at 900.147 kb on + strand at 900.201 kb on - strand at 900.224 kb on - strand, within Dshi_0885 at 900.392 kb on - strand, within Dshi_0885 at 900.428 kb on - strand, within Dshi_0885 at 900.501 kb on + strand, within Dshi_0885 at 900.501 kb on + strand, within Dshi_0885 at 900.650 kb on + strand, within Dshi_0885 at 900.772 kb on - strand, within Dshi_0885 at 900.831 kb on + strand, within Dshi_0885 at 900.839 kb on - strand, within Dshi_0885 at 900.875 kb on - strand, within Dshi_0885 at 900.967 kb on - strand, within Dshi_0885 at 901.056 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 898,031 - Dshi_0882 0.40 +0.4 898,065 + Dshi_0882 0.43 +1.0 898,228 - Dshi_0882 0.60 -0.8 898,262 + Dshi_0882 0.63 +0.6 898,317 + Dshi_0882 0.69 -1.5 898,351 - Dshi_0882 0.73 -0.2 898,562 - +1.4 898,653 + Dshi_0883 0.17 -0.6 898,653 - Dshi_0883 0.17 -1.2 898,822 + -1.2 898,869 + +0.1 899,024 - +0.2 899,064 + -1.2 899,151 + Dshi_0884 0.11 -1.5 899,328 + Dshi_0884 0.27 -0.7 899,437 + Dshi_0884 0.37 -0.6 899,515 + Dshi_0884 0.45 -0.6 899,550 - Dshi_0884 0.48 +0.1 899,589 - Dshi_0884 0.52 +0.4 899,757 - Dshi_0884 0.67 -0.6 899,765 - Dshi_0884 0.68 +2.4 899,785 + +0.4 899,815 + Dshi_0884 0.72 +1.0 899,846 - Dshi_0884 0.75 +0.0 899,957 + Dshi_0884 0.86 -0.2 900,076 - -1.6 900,147 + -2.4 900,201 - -0.3 900,224 - Dshi_0885 0.12 -2.2 900,392 - Dshi_0885 0.29 +1.0 900,428 - Dshi_0885 0.33 -3.3 900,501 + Dshi_0885 0.40 +0.4 900,501 + Dshi_0885 0.40 -1.7 900,650 + Dshi_0885 0.56 -2.7 900,772 - Dshi_0885 0.68 -0.4 900,831 + Dshi_0885 0.74 +0.4 900,839 - Dshi_0885 0.75 -2.4 900,875 - Dshi_0885 0.79 +1.4 900,967 - Dshi_0885 0.88 -0.2 901,056 + -0.4
Or see this region's nucleotide sequence