Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0820

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0817 and Dshi_0818 overlap by 4 nucleotidesDshi_0818 and Dshi_0819 are separated by 24 nucleotidesDshi_0819 and Dshi_0820 are separated by 220 nucleotidesDshi_0820 and Dshi_5001 are separated by 81 nucleotidesDshi_5001 and Dshi_0821 are separated by 13 nucleotides Dshi_0817: Dshi_0817 - hypothetical protein (RefSeq), at 823,262 to 823,522 _0817 Dshi_0818: Dshi_0818 - hypothetical protein (RefSeq), at 823,519 to 823,725 _0818 Dshi_0819: Dshi_0819 - hypothetical protein (RefSeq), at 823,750 to 824,046 _0819 Dshi_0820: Dshi_0820 - alpha/beta hydrolase fold (RefSeq), at 824,267 to 825,034 _0820 Dshi_5001: Dshi_5001 - hypothtical protein (RefSeq), at 825,116 to 825,505 _5001 Dshi_0821: Dshi_0821 - Glycine hydroxymethyltransferase (RefSeq), at 825,519 to 826,814 _0821 Position (kb) 824 825 826Strain fitness (log2 ratio) -2 -1 0 1 2 3at 823.267 kb on - strandat 823.288 kb on + strand, within Dshi_0817at 823.306 kb on + strand, within Dshi_0817at 823.321 kb on + strand, within Dshi_0817at 823.384 kb on - strand, within Dshi_0817at 823.573 kb on - strand, within Dshi_0818at 823.708 kb on + strandat 823.793 kb on - strand, within Dshi_0819at 823.830 kb on - strand, within Dshi_0819at 823.857 kb on - strand, within Dshi_0819at 823.908 kb on + strand, within Dshi_0819at 823.942 kb on + strand, within Dshi_0819at 823.957 kb on + strand, within Dshi_0819at 823.974 kb on - strand, within Dshi_0819at 824.006 kb on + strand, within Dshi_0819at 824.077 kb on + strandat 824.085 kb on - strandat 824.101 kb on + strandat 824.101 kb on + strandat 824.109 kb on - strandat 824.167 kb on + strandat 824.319 kb on + strandat 824.451 kb on - strand, within Dshi_0820at 824.451 kb on - strand, within Dshi_0820at 824.686 kb on + strand, within Dshi_0820at 824.794 kb on - strand, within Dshi_0820at 824.876 kb on - strand, within Dshi_0820at 824.917 kb on + strand, within Dshi_0820at 824.969 kb on - strandat 825.020 kb on - strandat 825.064 kb on - strandat 825.121 kb on - strandat 825.125 kb on - strandat 825.298 kb on - strand, within Dshi_5001at 825.309 kb on + strand, within Dshi_5001at 825.379 kb on + strand, within Dshi_5001at 825.494 kb on + strandat 825.525 kb on - strandat 825.528 kb on + strandat 825.692 kb on + strand, within Dshi_0821at 825.713 kb on + strand, within Dshi_0821at 825.799 kb on - strand, within Dshi_0821at 825.842 kb on + strand, within Dshi_0821at 825.850 kb on - strand, within Dshi_0821

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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823,267 - -1.5
823,288 + Dshi_0817 0.10 +2.5
823,306 + Dshi_0817 0.17 +0.7
823,321 + Dshi_0817 0.23 +2.8
823,384 - Dshi_0817 0.47 +0.5
823,573 - Dshi_0818 0.26 -0.0
823,708 + -1.8
823,793 - Dshi_0819 0.14 +0.8
823,830 - Dshi_0819 0.27 +1.0
823,857 - Dshi_0819 0.36 -1.6
823,908 + Dshi_0819 0.53 +0.5
823,942 + Dshi_0819 0.65 -1.6
823,957 + Dshi_0819 0.70 -0.7
823,974 - Dshi_0819 0.75 +0.1
824,006 + Dshi_0819 0.86 +0.5
824,077 + +0.5
824,085 - -1.1
824,101 + +0.3
824,101 + -1.5
824,109 - +0.6
824,167 + -1.5
824,319 + +0.6
824,451 - Dshi_0820 0.24 -0.1
824,451 - Dshi_0820 0.24 +3.0
824,686 + Dshi_0820 0.55 -0.5
824,794 - Dshi_0820 0.69 -0.8
824,876 - Dshi_0820 0.79 -0.4
824,917 + Dshi_0820 0.85 +2.5
824,969 - -0.9
825,020 - -2.1
825,064 - +0.2
825,121 - -2.1
825,125 - +0.1
825,298 - Dshi_5001 0.47 +0.5
825,309 + Dshi_5001 0.49 -0.5
825,379 + Dshi_5001 0.67 +0.5
825,494 + -0.2
825,525 - +0.1
825,528 + -0.5
825,692 + Dshi_0821 0.13 +0.4
825,713 + Dshi_0821 0.15 -1.0
825,799 - Dshi_0821 0.22 +3.1
825,842 + Dshi_0821 0.25 -0.7
825,850 - Dshi_0821 0.26 -1.1

Or see this region's nucleotide sequence