Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0798 and Dshi_0799 are separated by 266 nucleotides Dshi_0799 and Dshi_0800 are separated by 162 nucleotides Dshi_0800 and Dshi_0801 are separated by 7 nucleotides
Dshi_0798: Dshi_0798 - acetylornithine and succinylornithine aminotransferase (RefSeq), at 804,432 to 805,613
_0798
Dshi_0799: Dshi_0799 - putative DNA-binding protein (RefSeq), at 805,880 to 806,218
_0799
Dshi_0800: Dshi_0800 - transcriptional regulator, IclR family (RefSeq), at 806,381 to 807,163
_0800
Dshi_0801: Dshi_0801 - TRAP C4-dicarboxylate transport system permease DctM subunit (RefSeq), at 807,171 to 808,529
_0801
Position (kb)
805
806
807 Strain fitness (log2 ratio)
-2
-1
0
1
2
3 at 805.630 kb on + strand at 805.641 kb on + strand at 805.641 kb on + strand at 805.648 kb on + strand at 805.799 kb on + strand at 805.848 kb on - strand at 805.905 kb on + strand at 805.957 kb on - strand, within Dshi_0799 at 805.993 kb on - strand, within Dshi_0799 at 806.026 kb on + strand, within Dshi_0799 at 806.034 kb on - strand, within Dshi_0799 at 806.070 kb on + strand, within Dshi_0799 at 806.125 kb on - strand, within Dshi_0799 at 806.146 kb on + strand, within Dshi_0799 at 806.184 kb on + strand, within Dshi_0799 at 806.386 kb on - strand at 806.412 kb on - strand at 806.506 kb on + strand, within Dshi_0800 at 806.629 kb on + strand, within Dshi_0800 at 806.669 kb on - strand, within Dshi_0800 at 806.703 kb on + strand, within Dshi_0800 at 806.714 kb on + strand, within Dshi_0800 at 806.721 kb on - strand, within Dshi_0800 at 806.758 kb on + strand, within Dshi_0800 at 806.804 kb on - strand, within Dshi_0800 at 806.852 kb on - strand, within Dshi_0800 at 806.982 kb on - strand, within Dshi_0800 at 806.982 kb on - strand, within Dshi_0800 at 806.989 kb on - strand, within Dshi_0800 at 807.169 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 805,630 + +1.5 805,641 + +1.3 805,641 + +1.3 805,648 + +3.7 805,799 + -0.6 805,848 - -0.8 805,905 + -0.2 805,957 - Dshi_0799 0.23 +1.3 805,993 - Dshi_0799 0.33 +0.7 806,026 + Dshi_0799 0.43 -0.5 806,034 - Dshi_0799 0.45 +1.1 806,070 + Dshi_0799 0.56 +0.0 806,125 - Dshi_0799 0.72 +0.3 806,146 + Dshi_0799 0.78 -0.9 806,184 + Dshi_0799 0.90 +0.8 806,386 - +3.1 806,412 - -0.5 806,506 + Dshi_0800 0.16 +1.0 806,629 + Dshi_0800 0.32 +0.3 806,669 - Dshi_0800 0.37 +0.1 806,703 + Dshi_0800 0.41 -0.8 806,714 + Dshi_0800 0.43 -1.8 806,721 - Dshi_0800 0.43 -1.1 806,758 + Dshi_0800 0.48 +0.8 806,804 - Dshi_0800 0.54 -1.7 806,852 - Dshi_0800 0.60 -2.4 806,982 - Dshi_0800 0.77 -0.2 806,982 - Dshi_0800 0.77 -0.4 806,989 - Dshi_0800 0.78 +0.3 807,169 + +3.1
Or see this region's nucleotide sequence