Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0731 and Dshi_0732 overlap by 4 nucleotides Dshi_0732 and Dshi_0733 overlap by 8 nucleotides Dshi_0733 and Dshi_0734 overlap by 4 nucleotides Dshi_0734 and Dshi_0735 overlap by 14 nucleotides
Dshi_0731: Dshi_0731 - NADH dehydrogenase (quinone) (RefSeq), at 740,109 to 741,644
_0731
Dshi_0732: Dshi_0732 - cation antiporter (RefSeq), at 741,641 to 741,994
_0732
Dshi_0733: Dshi_0733 - multiple resistance and pH regulation protein F (RefSeq), at 741,987 to 742,343
_0733
Dshi_0734: Dshi_0734 - monovalent cation/proton antiporter, MnhG/PhaG subunit (RefSeq), at 742,340 to 742,687
_0734
Dshi_0735: Dshi_0735 - hypothetical protein (RefSeq), at 742,674 to 743,288
_0735
Position (kb) 741
742 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 740.652 kb on + strand, within Dshi_0731 at 740.660 kb on + strand, within Dshi_0731 at 740.772 kb on + strand, within Dshi_0731 at 740.855 kb on + strand, within Dshi_0731 at 740.858 kb on - strand, within Dshi_0731 at 740.932 kb on + strand, within Dshi_0731 at 740.945 kb on - strand, within Dshi_0731 at 741.033 kb on + strand, within Dshi_0731 at 741.048 kb on - strand, within Dshi_0731 at 741.132 kb on + strand, within Dshi_0731 at 741.154 kb on + strand, within Dshi_0731 at 741.154 kb on + strand, within Dshi_0731 at 741.303 kb on - strand, within Dshi_0731 at 741.310 kb on + strand, within Dshi_0731 at 741.347 kb on + strand, within Dshi_0731 at 741.472 kb on - strand, within Dshi_0731 at 741.506 kb on + strand at 741.514 kb on - strand at 741.554 kb on + strand at 741.577 kb on + strand at 741.577 kb on + strand at 741.604 kb on - strand at 741.734 kb on - strand, within Dshi_0732 at 741.763 kb on + strand, within Dshi_0732 at 742.122 kb on - strand, within Dshi_0733 at 742.141 kb on + strand, within Dshi_0733 at 742.375 kb on + strand, within Dshi_0734 at 742.470 kb on + strand, within Dshi_0734 at 742.518 kb on - strand, within Dshi_0734 at 742.578 kb on + strand, within Dshi_0734 at 742.601 kb on + strand, within Dshi_0734 at 742.628 kb on + strand, within Dshi_0734 at 742.629 kb on - strand, within Dshi_0734 at 742.684 kb on - strand at 742.684 kb on - strand at 742.764 kb on - strand, within Dshi_0735 at 742.768 kb on + strand, within Dshi_0735 at 742.778 kb on + strand, within Dshi_0735 at 742.834 kb on + strand, within Dshi_0735 at 742.864 kb on - strand, within Dshi_0735 at 742.942 kb on + strand, within Dshi_0735 at 742.950 kb on - strand, within Dshi_0735
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 740,652 + Dshi_0731 0.35 +3.1 740,660 + Dshi_0731 0.36 -0.5 740,772 + Dshi_0731 0.43 +1.0 740,855 + Dshi_0731 0.49 -0.4 740,858 - Dshi_0731 0.49 -1.6 740,932 + Dshi_0731 0.54 -0.8 740,945 - Dshi_0731 0.54 +1.7 741,033 + Dshi_0731 0.60 +0.7 741,048 - Dshi_0731 0.61 +0.2 741,132 + Dshi_0731 0.67 -0.0 741,154 + Dshi_0731 0.68 +1.8 741,154 + Dshi_0731 0.68 -2.3 741,303 - Dshi_0731 0.78 +1.5 741,310 + Dshi_0731 0.78 -3.8 741,347 + Dshi_0731 0.81 +1.8 741,472 - Dshi_0731 0.89 -0.0 741,506 + -0.4 741,514 - -0.4 741,554 + -0.5 741,577 + -1.8 741,577 + +0.5 741,604 - -0.9 741,734 - Dshi_0732 0.26 -0.5 741,763 + Dshi_0732 0.34 -0.9 742,122 - Dshi_0733 0.38 +0.9 742,141 + Dshi_0733 0.43 +1.5 742,375 + Dshi_0734 0.10 +0.5 742,470 + Dshi_0734 0.37 +0.3 742,518 - Dshi_0734 0.51 -0.7 742,578 + Dshi_0734 0.68 +1.5 742,601 + Dshi_0734 0.75 +1.5 742,628 + Dshi_0734 0.83 +3.1 742,629 - Dshi_0734 0.83 -0.7 742,684 - +2.1 742,684 - +0.5 742,764 - Dshi_0735 0.15 +0.2 742,768 + Dshi_0735 0.15 +0.5 742,778 + Dshi_0735 0.17 +3.9 742,834 + Dshi_0735 0.26 +0.5 742,864 - Dshi_0735 0.31 +0.3 742,942 + Dshi_0735 0.44 +2.8 742,950 - Dshi_0735 0.45 +1.5
Or see this region's nucleotide sequence