Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0721 and Dshi_0722 are separated by 14 nucleotides Dshi_0722 and Dshi_0723 are separated by 358 nucleotides Dshi_0723 and Dshi_0724 are separated by 64 nucleotides Dshi_0724 and Dshi_0725 are separated by 108 nucleotides
Dshi_0721: Dshi_0721 - hypothetical protein (RefSeq), at 728,665 to 729,036
_0721
Dshi_0722: Dshi_0722 - hypothetical protein (RefSeq), at 729,051 to 729,410
_0722
Dshi_0723: Dshi_0723 - Propionyl-CoA carboxylase biotin-containing subunit (EC 6.4.1.3) <small>(from data)</small>, at 729,769 to 731,814
_0723
Dshi_0724: Dshi_0724 - hypothetical protein (RefSeq), at 731,879 to 732,328
_0724
Dshi_0725: Dshi_0725 - hypothetical protein (RefSeq), at 732,437 to 733,432
_0725
Position (kb) 729
730
731
732 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 728.890 kb on + strand, within Dshi_0721 at 729.192 kb on + strand, within Dshi_0722 at 729.192 kb on + strand, within Dshi_0722 at 729.304 kb on + strand, within Dshi_0722 at 729.347 kb on + strand, within Dshi_0722 at 729.376 kb on + strand at 729.416 kb on + strand at 729.544 kb on + strand at 729.562 kb on - strand at 729.684 kb on + strand at 729.694 kb on - strand at 729.817 kb on + strand at 729.863 kb on + strand at 729.871 kb on - strand at 730.430 kb on + strand, within Dshi_0723 at 730.480 kb on - strand, within Dshi_0723 at 730.507 kb on - strand, within Dshi_0723 at 730.539 kb on + strand, within Dshi_0723 at 730.550 kb on + strand, within Dshi_0723 at 730.554 kb on + strand, within Dshi_0723 at 730.554 kb on + strand, within Dshi_0723 at 730.561 kb on + strand, within Dshi_0723 at 730.644 kb on + strand, within Dshi_0723 at 730.644 kb on + strand, within Dshi_0723 at 730.674 kb on + strand, within Dshi_0723 at 730.680 kb on - strand, within Dshi_0723 at 730.721 kb on + strand, within Dshi_0723 at 730.721 kb on + strand, within Dshi_0723 at 730.756 kb on - strand, within Dshi_0723 at 730.838 kb on - strand, within Dshi_0723 at 730.878 kb on - strand, within Dshi_0723 at 731.054 kb on + strand, within Dshi_0723 at 731.062 kb on + strand, within Dshi_0723 at 731.107 kb on + strand, within Dshi_0723 at 731.250 kb on + strand, within Dshi_0723 at 731.936 kb on + strand, within Dshi_0724 at 732.090 kb on + strand, within Dshi_0724 at 732.167 kb on - strand, within Dshi_0724 at 732.176 kb on + strand, within Dshi_0724 at 732.176 kb on + strand, within Dshi_0724 at 732.176 kb on + strand, within Dshi_0724 at 732.176 kb on + strand, within Dshi_0724 at 732.176 kb on + strand, within Dshi_0724 at 732.176 kb on + strand, within Dshi_0724 at 732.184 kb on - strand, within Dshi_0724 at 732.184 kb on - strand, within Dshi_0724 at 732.184 kb on - strand, within Dshi_0724 at 732.222 kb on - strand, within Dshi_0724 at 732.248 kb on - strand, within Dshi_0724 at 732.330 kb on - strand at 732.432 kb on - strand at 732.440 kb on - strand at 732.451 kb on + strand at 732.459 kb on - strand at 732.459 kb on - strand at 732.459 kb on - strand at 732.459 kb on - strand at 732.459 kb on - strand at 732.570 kb on + strand, within Dshi_0725 at 732.622 kb on - strand, within Dshi_0725 at 732.688 kb on + strand, within Dshi_0725 at 732.738 kb on + strand, within Dshi_0725 at 732.788 kb on + strand, within Dshi_0725 at 732.814 kb on + strand, within Dshi_0725
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 728,890 + Dshi_0721 0.60 +0.1 729,192 + Dshi_0722 0.39 -2.3 729,192 + Dshi_0722 0.39 -1.1 729,304 + Dshi_0722 0.70 +0.5 729,347 + Dshi_0722 0.82 +0.2 729,376 + -3.0 729,416 + -2.5 729,544 + +1.5 729,562 - +0.7 729,684 + -0.6 729,694 - -0.1 729,817 + +1.3 729,863 + -3.5 729,871 - +0.5 730,430 + Dshi_0723 0.32 +0.1 730,480 - Dshi_0723 0.35 -1.1 730,507 - Dshi_0723 0.36 -2.6 730,539 + Dshi_0723 0.38 +1.5 730,550 + Dshi_0723 0.38 -1.3 730,554 + Dshi_0723 0.38 -2.1 730,554 + Dshi_0723 0.38 -1.5 730,561 + Dshi_0723 0.39 +0.5 730,644 + Dshi_0723 0.43 +0.5 730,644 + Dshi_0723 0.43 -0.9 730,674 + Dshi_0723 0.44 -1.3 730,680 - Dshi_0723 0.45 +0.5 730,721 + Dshi_0723 0.47 -2.5 730,721 + Dshi_0723 0.47 -1.5 730,756 - Dshi_0723 0.48 +2.8 730,838 - Dshi_0723 0.52 -2.0 730,878 - Dshi_0723 0.54 -0.8 731,054 + Dshi_0723 0.63 -1.1 731,062 + Dshi_0723 0.63 +0.5 731,107 + Dshi_0723 0.65 +0.5 731,250 + Dshi_0723 0.72 -0.3 731,936 + Dshi_0724 0.13 -1.9 732,090 + Dshi_0724 0.47 +0.5 732,167 - Dshi_0724 0.64 -0.2 732,176 + Dshi_0724 0.66 -1.5 732,176 + Dshi_0724 0.66 -0.5 732,176 + Dshi_0724 0.66 -0.4 732,176 + Dshi_0724 0.66 +0.5 732,176 + Dshi_0724 0.66 +0.5 732,176 + Dshi_0724 0.66 -1.3 732,184 - Dshi_0724 0.68 +1.5 732,184 - Dshi_0724 0.68 -1.1 732,184 - Dshi_0724 0.68 -0.3 732,222 - Dshi_0724 0.76 +2.5 732,248 - Dshi_0724 0.82 +3.5 732,330 - -0.5 732,432 - -2.6 732,440 - +0.6 732,451 + +0.3 732,459 - +0.1 732,459 - -0.9 732,459 - -0.8 732,459 - +2.1 732,459 - +2.1 732,570 + Dshi_0725 0.13 +1.5 732,622 - Dshi_0725 0.19 +1.5 732,688 + Dshi_0725 0.25 -1.0 732,738 + Dshi_0725 0.30 -1.5 732,788 + Dshi_0725 0.35 -1.9 732,814 + Dshi_0725 0.38 +2.8
Or see this region's nucleotide sequence