Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_6017

Experiment: m.b. A22 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_6016 and Dshi_6017 are separated by 196 nucleotidesDshi_6017 and Dshi_0625 are separated by 109 nucleotides Dshi_6016: Dshi_6016 - 23SrRNA (RefSeq), at 619,764 to 622,680 _6016 Dshi_6017: Dshi_6017 - 5SrRNA (RefSeq), at 622,877 to 622,994 _6017 Dshi_0625: Dshi_0625 - hypothetical protein (RefSeq), at 623,104 to 623,826 _0625 Position (kb) 622 623Strain fitness (log2 ratio) -1 0 1 2at 623.220 kb on - strand, within Dshi_0625at 623.481 kb on - strand, within Dshi_0625

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
remove
623,220 - Dshi_0625 0.16 +2.3
623,481 - Dshi_0625 0.52 -0.0

Or see this region's nucleotide sequence