Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0617 and Dshi_0618 are separated by 44 nucleotides Dshi_0618 and Dshi_0619 are separated by 228 nucleotides Dshi_0619 and Dshi_0620 overlap by 4 nucleotides
Dshi_0617: Dshi_0617 - ATPase AAA-2 domain protein (RefSeq), at 609,070 to 611,685
_0617
Dshi_0618: Dshi_0618 - hypothetical protein (RefSeq), at 611,730 to 612,320
_0618
Dshi_0619: Dshi_0619 - hypothetical protein (RefSeq), at 612,549 to 612,863
_0619
Dshi_0620: Dshi_0620 - short-chain dehydrogenase/reductase SDR (RefSeq), at 612,860 to 613,612
_0620
Position (kb)
611
612
613 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 610.758 kb on - strand, within Dshi_0617 at 610.841 kb on - strand, within Dshi_0617 at 610.905 kb on + strand, within Dshi_0617 at 610.905 kb on + strand, within Dshi_0617 at 611.011 kb on + strand, within Dshi_0617 at 611.019 kb on - strand, within Dshi_0617 at 611.020 kb on - strand, within Dshi_0617 at 611.049 kb on + strand, within Dshi_0617 at 611.155 kb on + strand, within Dshi_0617 at 611.180 kb on + strand, within Dshi_0617 at 611.221 kb on - strand, within Dshi_0617 at 611.262 kb on + strand, within Dshi_0617 at 611.430 kb on - strand at 611.432 kb on + strand at 611.436 kb on + strand at 611.490 kb on - strand at 611.542 kb on + strand at 611.707 kb on + strand at 611.775 kb on + strand at 611.863 kb on + strand, within Dshi_0618 at 611.974 kb on - strand, within Dshi_0618 at 612.296 kb on - strand at 612.376 kb on + strand at 612.383 kb on + strand at 612.391 kb on - strand at 612.391 kb on - strand at 612.442 kb on + strand at 612.526 kb on + strand at 612.527 kb on + strand at 612.600 kb on - strand, within Dshi_0619 at 612.651 kb on - strand, within Dshi_0619 at 612.673 kb on + strand, within Dshi_0619 at 612.707 kb on - strand, within Dshi_0619 at 612.746 kb on + strand, within Dshi_0619 at 612.811 kb on + strand, within Dshi_0619 at 612.819 kb on - strand, within Dshi_0619 at 612.848 kb on - strand at 612.915 kb on + strand at 613.009 kb on - strand, within Dshi_0620 at 613.053 kb on + strand, within Dshi_0620 at 613.078 kb on + strand, within Dshi_0620 at 613.088 kb on + strand, within Dshi_0620 at 613.120 kb on + strand, within Dshi_0620 at 613.128 kb on + strand, within Dshi_0620 at 613.130 kb on - strand, within Dshi_0620 at 613.169 kb on + strand, within Dshi_0620 at 613.186 kb on + strand, within Dshi_0620 at 613.188 kb on + strand, within Dshi_0620 at 613.188 kb on + strand, within Dshi_0620 at 613.226 kb on - strand, within Dshi_0620 at 613.249 kb on + strand, within Dshi_0620
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 610,758 - Dshi_0617 0.65 +0.3 610,841 - Dshi_0617 0.68 -2.2 610,905 + Dshi_0617 0.70 -0.4 610,905 + Dshi_0617 0.70 -2.7 611,011 + Dshi_0617 0.74 -0.7 611,019 - Dshi_0617 0.75 -1.7 611,020 - Dshi_0617 0.75 -0.3 611,049 + Dshi_0617 0.76 -1.1 611,155 + Dshi_0617 0.80 -0.1 611,180 + Dshi_0617 0.81 -1.1 611,221 - Dshi_0617 0.82 -0.5 611,262 + Dshi_0617 0.84 +0.7 611,430 - -0.6 611,432 + -2.2 611,436 + -4.3 611,490 - -0.4 611,542 + +0.8 611,707 + +1.2 611,775 + -2.5 611,863 + Dshi_0618 0.23 -2.2 611,974 - Dshi_0618 0.41 -1.0 612,296 - -0.2 612,376 + -1.2 612,383 + -0.4 612,391 - -1.1 612,391 - -0.3 612,442 + -0.4 612,526 + -1.2 612,527 + -0.4 612,600 - Dshi_0619 0.16 +0.2 612,651 - Dshi_0619 0.32 +0.3 612,673 + Dshi_0619 0.39 +0.1 612,707 - Dshi_0619 0.50 +0.9 612,746 + Dshi_0619 0.63 +1.3 612,811 + Dshi_0619 0.83 -1.1 612,819 - Dshi_0619 0.86 +1.6 612,848 - -1.9 612,915 + -0.1 613,009 - Dshi_0620 0.20 -1.9 613,053 + Dshi_0620 0.26 +0.1 613,078 + Dshi_0620 0.29 -1.1 613,088 + Dshi_0620 0.30 -0.4 613,120 + Dshi_0620 0.35 -0.2 613,128 + Dshi_0620 0.36 +1.7 613,130 - Dshi_0620 0.36 -0.1 613,169 + Dshi_0620 0.41 -1.7 613,186 + Dshi_0620 0.43 +0.3 613,188 + Dshi_0620 0.44 -0.5 613,188 + Dshi_0620 0.44 +0.5 613,226 - Dshi_0620 0.49 -1.9 613,249 + Dshi_0620 0.52 +0.1
Or see this region's nucleotide sequence