Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0599

Experiment: m.b. A22 0.02 mg/ml

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDshi_0597 and Dshi_0598 are separated by 126 nucleotidesDshi_0598 and Dshi_0599 overlap by 4 nucleotidesDshi_0599 and Dshi_0600 are separated by 46 nucleotides Dshi_0597: Dshi_0597 - hypothetical protein (RefSeq), at 588,851 to 589,648 _0597 Dshi_0598: Dshi_0598 - short-chain dehydrogenase/reductase SDR (RefSeq), at 589,775 to 590,440 _0598 Dshi_0599: Dshi_0599 - deoxyribodipyrimidine photolyase-related protein (RefSeq), at 590,437 to 591,963 _0599 Dshi_0600: Dshi_0600 - MORN repeat-containing protein (RefSeq), at 592,010 to 593,416 _0600 Position (kb) 590 591 592Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4at 589.438 kb on - strand, within Dshi_0597at 589.438 kb on - strand, within Dshi_0597at 589.438 kb on - strand, within Dshi_0597at 589.438 kb on - strand, within Dshi_0597at 589.456 kb on + strand, within Dshi_0597at 589.496 kb on - strand, within Dshi_0597at 589.535 kb on + strand, within Dshi_0597at 589.543 kb on - strand, within Dshi_0597at 589.565 kb on + strand, within Dshi_0597at 589.590 kb on - strandat 589.595 kb on + strandat 589.602 kb on + strandat 589.602 kb on + strandat 589.610 kb on - strandat 589.610 kb on - strandat 589.629 kb on + strandat 589.637 kb on - strandat 589.639 kb on - strandat 589.651 kb on - strandat 589.658 kb on - strandat 589.658 kb on - strandat 589.658 kb on - strandat 589.674 kb on + strandat 589.674 kb on + strandat 589.682 kb on - strandat 589.683 kb on - strandat 589.756 kb on + strandat 589.772 kb on + strandat 589.904 kb on + strand, within Dshi_0598at 589.919 kb on + strand, within Dshi_0598at 589.927 kb on - strand, within Dshi_0598at 589.970 kb on - strand, within Dshi_0598at 590.039 kb on - strand, within Dshi_0598at 590.066 kb on + strand, within Dshi_0598at 590.069 kb on - strand, within Dshi_0598at 590.111 kb on - strand, within Dshi_0598at 590.140 kb on + strand, within Dshi_0598at 590.489 kb on - strandat 590.552 kb on + strandat 590.652 kb on - strand, within Dshi_0599at 590.652 kb on - strand, within Dshi_0599at 590.673 kb on - strand, within Dshi_0599at 590.752 kb on - strand, within Dshi_0599at 590.763 kb on + strand, within Dshi_0599at 590.817 kb on + strand, within Dshi_0599at 590.846 kb on - strand, within Dshi_0599at 590.846 kb on - strand, within Dshi_0599at 590.991 kb on + strand, within Dshi_0599at 591.005 kb on - strand, within Dshi_0599at 591.028 kb on - strand, within Dshi_0599at 591.043 kb on - strand, within Dshi_0599at 591.095 kb on - strand, within Dshi_0599at 591.157 kb on + strand, within Dshi_0599at 591.157 kb on + strand, within Dshi_0599at 591.165 kb on - strand, within Dshi_0599at 591.232 kb on + strand, within Dshi_0599at 591.240 kb on - strand, within Dshi_0599at 591.240 kb on - strand, within Dshi_0599at 591.255 kb on - strand, within Dshi_0599at 591.255 kb on - strand, within Dshi_0599at 591.301 kb on + strand, within Dshi_0599at 591.320 kb on + strand, within Dshi_0599at 591.320 kb on + strand, within Dshi_0599at 591.320 kb on - strand, within Dshi_0599at 591.322 kb on + strand, within Dshi_0599at 591.322 kb on + strand, within Dshi_0599at 591.322 kb on + strand, within Dshi_0599at 591.381 kb on + strand, within Dshi_0599at 591.404 kb on - strand, within Dshi_0599at 591.419 kb on + strand, within Dshi_0599at 591.449 kb on + strand, within Dshi_0599at 591.460 kb on + strand, within Dshi_0599at 591.477 kb on + strand, within Dshi_0599at 591.490 kb on + strand, within Dshi_0599at 591.505 kb on - strand, within Dshi_0599at 591.507 kb on + strand, within Dshi_0599at 591.507 kb on + strand, within Dshi_0599at 591.507 kb on + strand, within Dshi_0599at 591.517 kb on + strand, within Dshi_0599at 591.524 kb on + strand, within Dshi_0599at 591.569 kb on - strand, within Dshi_0599at 591.586 kb on + strand, within Dshi_0599at 591.633 kb on + strand, within Dshi_0599at 591.643 kb on - strand, within Dshi_0599at 591.643 kb on - strand, within Dshi_0599at 591.649 kb on + strand, within Dshi_0599at 591.658 kb on - strand, within Dshi_0599at 591.686 kb on - strand, within Dshi_0599at 591.691 kb on + strand, within Dshi_0599at 591.697 kb on + strand, within Dshi_0599at 591.697 kb on + strand, within Dshi_0599at 591.716 kb on - strand, within Dshi_0599at 591.750 kb on - strand, within Dshi_0599at 591.770 kb on - strand, within Dshi_0599at 591.859 kb on + strandat 591.864 kb on - strandat 591.864 kb on - strandat 591.984 kb on + strandat 592.049 kb on - strandat 592.082 kb on - strandat 592.095 kb on - strandat 592.106 kb on + strandat 592.106 kb on + strandat 592.107 kb on + strandat 592.114 kb on - strandat 592.114 kb on - strandat 592.117 kb on + strandat 592.151 kb on - strand, within Dshi_0600at 592.162 kb on - strand, within Dshi_0600at 592.259 kb on - strand, within Dshi_0600at 592.336 kb on + strand, within Dshi_0600at 592.397 kb on - strand, within Dshi_0600at 592.406 kb on + strand, within Dshi_0600at 592.470 kb on - strand, within Dshi_0600at 592.509 kb on - strand, within Dshi_0600at 592.886 kb on + strand, within Dshi_0600at 592.899 kb on + strand, within Dshi_0600at 592.901 kb on + strand, within Dshi_0600

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
remove
589,438 - Dshi_0597 0.74 -1.9
589,438 - Dshi_0597 0.74 -0.5
589,438 - Dshi_0597 0.74 +0.8
589,438 - Dshi_0597 0.74 +0.2
589,456 + Dshi_0597 0.76 -0.7
589,496 - Dshi_0597 0.81 +0.5
589,535 + Dshi_0597 0.86 -2.8
589,543 - Dshi_0597 0.87 +0.2
589,565 + Dshi_0597 0.89 -0.2
589,590 - +3.4
589,595 + -0.8
589,602 + +0.4
589,602 + -0.1
589,610 - -1.3
589,610 - -1.5
589,629 + -1.5
589,637 - -0.1
589,639 - +1.0
589,651 - -1.4
589,658 - +0.9
589,658 - -1.4
589,658 - +0.3
589,674 + -0.0
589,674 + +0.5
589,682 - -0.2
589,683 - -1.2
589,756 + +2.1
589,772 + +3.2
589,904 + Dshi_0598 0.19 -1.1
589,919 + Dshi_0598 0.22 +0.9
589,927 - Dshi_0598 0.23 +0.4
589,970 - Dshi_0598 0.29 -0.3
590,039 - Dshi_0598 0.40 +0.2
590,066 + Dshi_0598 0.44 -1.0
590,069 - Dshi_0598 0.44 -2.6
590,111 - Dshi_0598 0.50 -0.8
590,140 + Dshi_0598 0.55 +0.4
590,489 - +0.2
590,552 + +0.5
590,652 - Dshi_0599 0.14 -2.7
590,652 - Dshi_0599 0.14 -0.2
590,673 - Dshi_0599 0.15 -0.8
590,752 - Dshi_0599 0.21 -0.3
590,763 + Dshi_0599 0.21 -0.5
590,817 + Dshi_0599 0.25 -0.6
590,846 - Dshi_0599 0.27 +0.3
590,846 - Dshi_0599 0.27 -0.7
590,991 + Dshi_0599 0.36 -1.8
591,005 - Dshi_0599 0.37 -0.3
591,028 - Dshi_0599 0.39 -1.1
591,043 - Dshi_0599 0.40 -1.5
591,095 - Dshi_0599 0.43 -0.9
591,157 + Dshi_0599 0.47 -0.0
591,157 + Dshi_0599 0.47 -0.1
591,165 - Dshi_0599 0.48 -0.6
591,232 + Dshi_0599 0.52 -0.1
591,240 - Dshi_0599 0.53 -0.8
591,240 - Dshi_0599 0.53 -0.4
591,255 - Dshi_0599 0.54 -0.2
591,255 - Dshi_0599 0.54 -2.0
591,301 + Dshi_0599 0.57 -1.7
591,320 + Dshi_0599 0.58 -2.4
591,320 + Dshi_0599 0.58 -0.8
591,320 - Dshi_0599 0.58 -1.3
591,322 + Dshi_0599 0.58 -0.4
591,322 + Dshi_0599 0.58 -1.0
591,322 + Dshi_0599 0.58 +1.2
591,381 + Dshi_0599 0.62 -0.5
591,404 - Dshi_0599 0.63 -1.7
591,419 + Dshi_0599 0.64 +0.2
591,449 + Dshi_0599 0.66 +0.4
591,460 + Dshi_0599 0.67 -1.3
591,477 + Dshi_0599 0.68 -0.4
591,490 + Dshi_0599 0.69 +4.0
591,505 - Dshi_0599 0.70 -0.8
591,507 + Dshi_0599 0.70 -0.1
591,507 + Dshi_0599 0.70 +0.1
591,507 + Dshi_0599 0.70 -0.5
591,517 + Dshi_0599 0.71 -0.2
591,524 + Dshi_0599 0.71 -0.7
591,569 - Dshi_0599 0.74 +1.4
591,586 + Dshi_0599 0.75 -0.1
591,633 + Dshi_0599 0.78 -1.7
591,643 - Dshi_0599 0.79 -0.8
591,643 - Dshi_0599 0.79 -1.4
591,649 + Dshi_0599 0.79 +2.4
591,658 - Dshi_0599 0.80 +0.0
591,686 - Dshi_0599 0.82 +0.3
591,691 + Dshi_0599 0.82 +1.3
591,697 + Dshi_0599 0.83 -2.0
591,697 + Dshi_0599 0.83 -1.4
591,716 - Dshi_0599 0.84 -1.0
591,750 - Dshi_0599 0.86 -0.8
591,770 - Dshi_0599 0.87 +0.6
591,859 + -1.2
591,864 - -0.0
591,864 - -0.1
591,984 + +0.6
592,049 - -0.0
592,082 - -1.9
592,095 - -0.8
592,106 + +0.6
592,106 + -3.2
592,107 + -0.9
592,114 - -0.6
592,114 - -0.3
592,117 + -1.5
592,151 - Dshi_0600 0.10 -1.5
592,162 - Dshi_0600 0.11 -1.4
592,259 - Dshi_0600 0.18 -3.2
592,336 + Dshi_0600 0.23 -0.0
592,397 - Dshi_0600 0.28 -0.8
592,406 + Dshi_0600 0.28 -0.3
592,470 - Dshi_0600 0.33 -1.9
592,509 - Dshi_0600 0.35 -2.2
592,886 + Dshi_0600 0.62 +0.2
592,899 + Dshi_0600 0.63 -0.8
592,901 + Dshi_0600 0.63 +2.5

Or see this region's nucleotide sequence