Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0537

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0536 and Dshi_0537 are separated by 29 nucleotidesDshi_0537 and Dshi_0538 are separated by 185 nucleotidesDshi_0538 and Dshi_0539 are separated by 13 nucleotides Dshi_0536: Dshi_0536 - biotin/lipoyl attachment domain-containing protein (RefSeq), at 520,939 to 522,135 _0536 Dshi_0537: Dshi_0537 - carbohydrate kinase FGGY (RefSeq), at 522,165 to 523,658 _0537 Dshi_0538: Dshi_0538 - protein of unknown function DUF1045 (RefSeq), at 523,844 to 524,515 _0538 Dshi_0539: Dshi_0539 - aldo/keto reductase (RefSeq), at 524,529 to 525,467 _0539 Position (kb) 522 523 524Strain fitness (log2 ratio) -2 -1 0 1 2 3at 521.171 kb on + strand, within Dshi_0536at 521.171 kb on + strand, within Dshi_0536at 521.179 kb on - strand, within Dshi_0536at 521.234 kb on + strand, within Dshi_0536at 521.339 kb on + strand, within Dshi_0536at 521.415 kb on + strand, within Dshi_0536at 521.423 kb on - strand, within Dshi_0536at 521.440 kb on + strand, within Dshi_0536at 521.500 kb on - strand, within Dshi_0536at 521.534 kb on + strand, within Dshi_0536at 521.587 kb on - strand, within Dshi_0536at 521.614 kb on - strand, within Dshi_0536at 521.678 kb on + strand, within Dshi_0536at 521.797 kb on - strand, within Dshi_0536at 521.934 kb on - strand, within Dshi_0536at 521.953 kb on + strand, within Dshi_0536at 521.953 kb on + strand, within Dshi_0536at 521.994 kb on + strand, within Dshi_0536at 522.066 kb on + strandat 522.106 kb on - strandat 522.140 kb on + strandat 522.153 kb on - strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.155 kb on + strandat 522.190 kb on + strandat 522.204 kb on - strandat 522.303 kb on + strandat 522.303 kb on + strandat 522.334 kb on - strand, within Dshi_0537at 522.425 kb on + strand, within Dshi_0537at 522.468 kb on + strand, within Dshi_0537at 522.498 kb on + strand, within Dshi_0537at 522.541 kb on + strand, within Dshi_0537at 522.549 kb on - strand, within Dshi_0537at 522.549 kb on - strand, within Dshi_0537at 522.551 kb on + strand, within Dshi_0537at 522.563 kb on + strand, within Dshi_0537at 522.663 kb on - strand, within Dshi_0537at 522.663 kb on - strand, within Dshi_0537at 522.665 kb on + strand, within Dshi_0537at 522.694 kb on - strand, within Dshi_0537at 522.707 kb on - strand, within Dshi_0537at 522.756 kb on + strand, within Dshi_0537at 522.769 kb on - strand, within Dshi_0537at 522.774 kb on - strand, within Dshi_0537at 522.774 kb on - strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.869 kb on + strand, within Dshi_0537at 522.916 kb on + strand, within Dshi_0537at 522.936 kb on + strand, within Dshi_0537at 522.942 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 522.944 kb on - strand, within Dshi_0537at 523.027 kb on - strand, within Dshi_0537at 523.106 kb on + strand, within Dshi_0537at 523.142 kb on + strand, within Dshi_0537at 523.176 kb on - strand, within Dshi_0537at 523.215 kb on + strand, within Dshi_0537at 523.215 kb on + strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.223 kb on - strand, within Dshi_0537at 523.274 kb on + strand, within Dshi_0537at 523.303 kb on - strand, within Dshi_0537at 523.393 kb on + strand, within Dshi_0537at 523.393 kb on + strand, within Dshi_0537at 523.544 kb on + strandat 523.544 kb on + strandat 523.552 kb on - strandat 523.552 kb on - strandat 523.574 kb on + strandat 523.584 kb on + strandat 523.597 kb on - strandat 523.609 kb on - strandat 523.640 kb on - strandat 523.752 kb on - strandat 523.753 kb on - strandat 523.754 kb on + strandat 523.762 kb on - strandat 523.766 kb on - strandat 523.813 kb on + strandat 523.813 kb on - strandat 524.540 kb on - strandat 524.572 kb on + strandat 524.577 kb on + strandat 524.595 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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521,171 + Dshi_0536 0.19 +1.9
521,171 + Dshi_0536 0.19 +0.1
521,179 - Dshi_0536 0.20 -0.9
521,234 + Dshi_0536 0.25 -0.8
521,339 + Dshi_0536 0.33 +0.2
521,415 + Dshi_0536 0.40 +0.9
521,423 - Dshi_0536 0.40 -0.2
521,440 + Dshi_0536 0.42 -0.7
521,500 - Dshi_0536 0.47 -0.2
521,534 + Dshi_0536 0.50 -0.2
521,587 - Dshi_0536 0.54 +1.2
521,614 - Dshi_0536 0.56 -0.1
521,678 + Dshi_0536 0.62 +1.1
521,797 - Dshi_0536 0.72 +0.9
521,934 - Dshi_0536 0.83 -0.2
521,953 + Dshi_0536 0.85 +0.4
521,953 + Dshi_0536 0.85 +0.5
521,994 + Dshi_0536 0.88 +0.3
522,066 + -0.1
522,106 - -0.3
522,140 + +3.4
522,153 - +0.6
522,155 + +0.2
522,155 + -0.9
522,155 + -0.4
522,155 + +0.9
522,190 + -1.3
522,204 - +0.9
522,303 + -1.0
522,303 + -1.6
522,334 - Dshi_0537 0.11 -0.1
522,425 + Dshi_0537 0.17 -0.3
522,468 + Dshi_0537 0.20 -0.1
522,498 + Dshi_0537 0.22 +0.0
522,541 + Dshi_0537 0.25 -0.1
522,549 - Dshi_0537 0.26 +0.5
522,549 - Dshi_0537 0.26 -1.1
522,551 + Dshi_0537 0.26 +0.3
522,563 + Dshi_0537 0.27 +0.3
522,663 - Dshi_0537 0.33 -0.3
522,663 - Dshi_0537 0.33 +1.2
522,665 + Dshi_0537 0.33 +1.0
522,694 - Dshi_0537 0.35 +1.5
522,707 - Dshi_0537 0.36 -0.5
522,756 + Dshi_0537 0.40 +1.0
522,769 - Dshi_0537 0.40 +0.5
522,774 - Dshi_0537 0.41 +1.0
522,774 - Dshi_0537 0.41 +0.2
522,869 + Dshi_0537 0.47 -1.1
522,869 + Dshi_0537 0.47 +1.8
522,916 + Dshi_0537 0.50 +1.4
522,936 + Dshi_0537 0.52 -0.1
522,942 - Dshi_0537 0.52 +0.3
522,944 - Dshi_0537 0.52 -0.4
522,944 - Dshi_0537 0.52 +1.2
523,027 - Dshi_0537 0.58 +0.0
523,106 + Dshi_0537 0.63 -0.3
523,142 + Dshi_0537 0.65 +1.3
523,176 - Dshi_0537 0.68 +0.4
523,215 + Dshi_0537 0.70 +1.5
523,215 + Dshi_0537 0.70 -1.3
523,223 - Dshi_0537 0.71 +1.8
523,223 - Dshi_0537 0.71 -2.3
523,223 - Dshi_0537 0.71 +1.1
523,274 + Dshi_0537 0.74 -0.1
523,303 - Dshi_0537 0.76 -1.1
523,393 + Dshi_0537 0.82 +0.2
523,393 + Dshi_0537 0.82 +0.4
523,544 + +1.0
523,544 + +2.5
523,552 - +0.0
523,552 - +0.2
523,574 + +1.7
523,584 + +0.3
523,597 - -0.2
523,609 - -0.7
523,640 - +1.8
523,752 - +0.0
523,753 - -0.1
523,754 + +0.2
523,762 - -0.0
523,766 - -0.6
523,813 + +0.8
523,813 - +0.0
524,540 - +0.0
524,572 + +1.2
524,577 + +0.6
524,595 - +0.1

Or see this region's nucleotide sequence