Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0451 and Dshi_0452 overlap by 1 nucleotides Dshi_0452 and Dshi_0453 overlap by 4 nucleotides Dshi_0453 and Dshi_0454 overlap by 4 nucleotides
Dshi_0451: Dshi_0451 - coenzyme PQQ biosynthesis protein B (RefSeq), at 438,663 to 439,556
_0451
Dshi_0452: Dshi_0452 - coenzyme PQQ biosynthesis protein C (RefSeq), at 439,556 to 440,308
_0452
Dshi_0453: Dshi_0453 - coenzyme PQQ synthesis D (RefSeq), at 440,305 to 440,583
_0453
Dshi_0454: Dshi_0454 - coenzyme PQQ biosynthesis protein E (RefSeq), at 440,580 to 441,686
_0454
Position (kb) 440
441 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 439.313 kb on + strand, within Dshi_0451 at 439.326 kb on + strand, within Dshi_0451 at 439.370 kb on + strand, within Dshi_0451 at 439.393 kb on + strand, within Dshi_0451 at 439.393 kb on + strand, within Dshi_0451 at 439.393 kb on + strand, within Dshi_0451 at 439.393 kb on + strand, within Dshi_0451 at 439.393 kb on + strand, within Dshi_0451 at 439.393 kb on + strand, within Dshi_0451 at 439.425 kb on - strand, within Dshi_0451 at 439.505 kb on + strand at 439.526 kb on - strand at 439.539 kb on + strand at 439.550 kb on + strand at 439.567 kb on - strand at 439.618 kb on - strand at 439.662 kb on + strand, within Dshi_0452 at 439.662 kb on + strand, within Dshi_0452 at 439.662 kb on + strand, within Dshi_0452 at 439.662 kb on + strand, within Dshi_0452 at 439.670 kb on - strand, within Dshi_0452 at 439.680 kb on - strand, within Dshi_0452 at 439.681 kb on - strand, within Dshi_0452 at 439.708 kb on + strand, within Dshi_0452 at 439.733 kb on + strand, within Dshi_0452 at 439.755 kb on + strand, within Dshi_0452 at 439.755 kb on + strand, within Dshi_0452 at 439.763 kb on - strand, within Dshi_0452 at 439.763 kb on - strand, within Dshi_0452 at 439.771 kb on + strand, within Dshi_0452 at 439.846 kb on + strand, within Dshi_0452 at 439.927 kb on - strand, within Dshi_0452 at 440.048 kb on + strand, within Dshi_0452 at 440.109 kb on + strand, within Dshi_0452 at 440.117 kb on - strand, within Dshi_0452 at 440.126 kb on - strand, within Dshi_0452 at 440.301 kb on - strand at 440.324 kb on + strand at 440.332 kb on - strand at 440.375 kb on + strand, within Dshi_0453 at 440.416 kb on - strand at 440.464 kb on + strand, within Dshi_0453 at 440.478 kb on + strand, within Dshi_0453 at 440.481 kb on - strand, within Dshi_0453 at 440.481 kb on - strand, within Dshi_0453 at 440.621 kb on - strand at 440.626 kb on - strand at 440.658 kb on - strand at 440.675 kb on + strand at 440.706 kb on - strand, within Dshi_0454 at 440.721 kb on - strand, within Dshi_0454 at 440.822 kb on + strand, within Dshi_0454 at 440.854 kb on + strand, within Dshi_0454 at 440.914 kb on + strand, within Dshi_0454 at 440.980 kb on + strand, within Dshi_0454 at 440.999 kb on + strand, within Dshi_0454 at 441.021 kb on - strand, within Dshi_0454 at 441.033 kb on - strand, within Dshi_0454 at 441.036 kb on + strand, within Dshi_0454 at 441.052 kb on + strand, within Dshi_0454 at 441.052 kb on + strand, within Dshi_0454 at 441.055 kb on - strand, within Dshi_0454 at 441.060 kb on - strand, within Dshi_0454 at 441.123 kb on + strand, within Dshi_0454 at 441.180 kb on - strand, within Dshi_0454 at 441.224 kb on + strand, within Dshi_0454 at 441.229 kb on + strand, within Dshi_0454 at 441.277 kb on + strand, within Dshi_0454 at 441.287 kb on + strand, within Dshi_0454 at 441.295 kb on - strand, within Dshi_0454 at 441.295 kb on - strand, within Dshi_0454 at 441.295 kb on - strand, within Dshi_0454 at 441.339 kb on + strand, within Dshi_0454 at 441.339 kb on + strand, within Dshi_0454 at 441.339 kb on + strand, within Dshi_0454 at 441.342 kb on - strand, within Dshi_0454 at 441.347 kb on - strand, within Dshi_0454 at 441.347 kb on - strand, within Dshi_0454 at 441.380 kb on - strand, within Dshi_0454 at 441.420 kb on + strand, within Dshi_0454 at 441.432 kb on + strand, within Dshi_0454 at 441.463 kb on - strand, within Dshi_0454 at 441.464 kb on - strand, within Dshi_0454 at 441.464 kb on - strand, within Dshi_0454 at 441.488 kb on + strand, within Dshi_0454 at 441.496 kb on - strand, within Dshi_0454 at 441.526 kb on - strand, within Dshi_0454 at 441.536 kb on + strand, within Dshi_0454 at 441.558 kb on + strand, within Dshi_0454 at 441.558 kb on + strand, within Dshi_0454 at 441.558 kb on + strand, within Dshi_0454 at 441.566 kb on - strand, within Dshi_0454
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 439,313 + Dshi_0451 0.73 -1.0 439,326 + Dshi_0451 0.74 +0.4 439,370 + Dshi_0451 0.79 -0.9 439,393 + Dshi_0451 0.82 +0.2 439,393 + Dshi_0451 0.82 -2.8 439,393 + Dshi_0451 0.82 -1.0 439,393 + Dshi_0451 0.82 +0.5 439,393 + Dshi_0451 0.82 -1.3 439,393 + Dshi_0451 0.82 -0.5 439,425 - Dshi_0451 0.85 -1.8 439,505 + -1.3 439,526 - -0.4 439,539 + +0.4 439,550 + +0.4 439,567 - +0.2 439,618 - +0.5 439,662 + Dshi_0452 0.14 -0.7 439,662 + Dshi_0452 0.14 +3.5 439,662 + Dshi_0452 0.14 -0.6 439,662 + Dshi_0452 0.14 +1.2 439,670 - Dshi_0452 0.15 -0.3 439,680 - Dshi_0452 0.16 -0.1 439,681 - Dshi_0452 0.17 +0.8 439,708 + Dshi_0452 0.20 -1.7 439,733 + Dshi_0452 0.24 -0.9 439,755 + Dshi_0452 0.26 -2.4 439,755 + Dshi_0452 0.26 -1.4 439,763 - Dshi_0452 0.27 -1.5 439,763 - Dshi_0452 0.27 -1.2 439,771 + Dshi_0452 0.29 -2.0 439,846 + Dshi_0452 0.39 +0.9 439,927 - Dshi_0452 0.49 -1.5 440,048 + Dshi_0452 0.65 -0.7 440,109 + Dshi_0452 0.73 -0.3 440,117 - Dshi_0452 0.75 +4.6 440,126 - Dshi_0452 0.76 -0.9 440,301 - -1.8 440,324 + -1.3 440,332 - -0.8 440,375 + Dshi_0453 0.25 +1.7 440,416 - -0.8 440,464 + Dshi_0453 0.57 -1.5 440,478 + Dshi_0453 0.62 -0.4 440,481 - Dshi_0453 0.63 -0.6 440,481 - Dshi_0453 0.63 -2.6 440,621 - -1.5 440,626 - +0.7 440,658 - -0.6 440,675 + +0.8 440,706 - Dshi_0454 0.11 +1.2 440,721 - Dshi_0454 0.13 -2.8 440,822 + Dshi_0454 0.22 +1.6 440,854 + Dshi_0454 0.25 -3.0 440,914 + Dshi_0454 0.30 -0.7 440,980 + Dshi_0454 0.36 -2.4 440,999 + Dshi_0454 0.38 -2.8 441,021 - Dshi_0454 0.40 +0.3 441,033 - Dshi_0454 0.41 +2.2 441,036 + Dshi_0454 0.41 -1.1 441,052 + Dshi_0454 0.43 -1.7 441,052 + Dshi_0454 0.43 -0.7 441,055 - Dshi_0454 0.43 -0.9 441,060 - Dshi_0454 0.43 +0.2 441,123 + Dshi_0454 0.49 +0.1 441,180 - Dshi_0454 0.54 +3.5 441,224 + Dshi_0454 0.58 +0.8 441,229 + Dshi_0454 0.59 +0.5 441,277 + Dshi_0454 0.63 -4.1 441,287 + Dshi_0454 0.64 +1.3 441,295 - Dshi_0454 0.65 -0.4 441,295 - Dshi_0454 0.65 -1.4 441,295 - Dshi_0454 0.65 -0.2 441,339 + Dshi_0454 0.69 +0.7 441,339 + Dshi_0454 0.69 -0.2 441,339 + Dshi_0454 0.69 +0.2 441,342 - Dshi_0454 0.69 -1.9 441,347 - Dshi_0454 0.69 -1.6 441,347 - Dshi_0454 0.69 -2.2 441,380 - Dshi_0454 0.72 -1.2 441,420 + Dshi_0454 0.76 +1.4 441,432 + Dshi_0454 0.77 +1.0 441,463 - Dshi_0454 0.80 -0.7 441,464 - Dshi_0454 0.80 -2.6 441,464 - Dshi_0454 0.80 +0.7 441,488 + Dshi_0454 0.82 +1.5 441,496 - Dshi_0454 0.83 -0.5 441,526 - Dshi_0454 0.85 -0.8 441,536 + Dshi_0454 0.86 +0.4 441,558 + Dshi_0454 0.88 -1.1 441,558 + Dshi_0454 0.88 -1.6 441,558 + Dshi_0454 0.88 -0.0 441,566 - Dshi_0454 0.89 +1.8
Or see this region's nucleotide sequence