Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0444 and Dshi_0445 are separated by 33 nucleotides Dshi_0445 and Dshi_0446 are separated by 130 nucleotides Dshi_0446 and Dshi_0447 are separated by 1 nucleotides Dshi_0447 and Dshi_0448 are separated by 316 nucleotides
Dshi_0444: Dshi_0444 - hypothetical protein (RefSeq), at 433,725 to 434,012
_0444
Dshi_0445: Dshi_0445 - hypothetical protein (RefSeq), at 434,046 to 434,438
_0445
Dshi_0446: Dshi_0446 - putative signal transduction protein with CBS domains (RefSeq), at 434,569 to 434,979
_0446
Dshi_0447: Dshi_0447 - transcriptional regulator, Crp/Fnr family (RefSeq), at 434,981 to 435,769
_0447
Dshi_0448: Dshi_0448 - integral membrane sensor signal transduction histidine kinase (RefSeq), at 436,086 to 437,696
_0448
Position (kb) 434
435
436 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 433.989 kb on + strand at 433.990 kb on + strand at 434.011 kb on + strand at 434.024 kb on - strand at 434.030 kb on - strand at 434.058 kb on + strand at 434.117 kb on - strand, within Dshi_0445 at 434.150 kb on + strand, within Dshi_0445 at 434.159 kb on + strand, within Dshi_0445 at 434.167 kb on - strand, within Dshi_0445 at 434.182 kb on + strand, within Dshi_0445 at 434.205 kb on + strand, within Dshi_0445 at 434.213 kb on - strand, within Dshi_0445 at 434.217 kb on + strand, within Dshi_0445 at 434.217 kb on + strand, within Dshi_0445 at 434.264 kb on + strand, within Dshi_0445 at 434.270 kb on - strand, within Dshi_0445 at 434.291 kb on - strand, within Dshi_0445 at 434.301 kb on + strand, within Dshi_0445 at 434.322 kb on - strand, within Dshi_0445 at 434.327 kb on + strand, within Dshi_0445 at 434.376 kb on - strand, within Dshi_0445 at 434.418 kb on + strand at 434.447 kb on + strand at 434.447 kb on + strand at 434.447 kb on + strand at 434.454 kb on - strand at 434.454 kb on - strand at 434.455 kb on - strand at 434.455 kb on - strand at 434.455 kb on - strand at 434.457 kb on + strand at 434.474 kb on + strand at 434.496 kb on + strand at 434.524 kb on + strand at 434.533 kb on - strand at 434.553 kb on + strand at 434.594 kb on + strand at 434.598 kb on + strand at 434.599 kb on + strand at 434.625 kb on + strand, within Dshi_0446 at 434.644 kb on - strand, within Dshi_0446 at 434.683 kb on + strand, within Dshi_0446 at 434.727 kb on + strand, within Dshi_0446 at 434.763 kb on + strand, within Dshi_0446 at 434.780 kb on - strand, within Dshi_0446 at 434.840 kb on - strand, within Dshi_0446 at 434.887 kb on + strand, within Dshi_0446 at 434.945 kb on + strand at 435.025 kb on + strand at 435.067 kb on + strand, within Dshi_0447 at 435.082 kb on + strand, within Dshi_0447 at 435.139 kb on - strand, within Dshi_0447 at 435.251 kb on + strand, within Dshi_0447 at 435.259 kb on - strand, within Dshi_0447 at 435.278 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.301 kb on + strand, within Dshi_0447 at 435.309 kb on - strand, within Dshi_0447 at 435.309 kb on - strand, within Dshi_0447 at 435.424 kb on + strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.427 kb on - strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.462 kb on + strand, within Dshi_0447 at 435.470 kb on - strand, within Dshi_0447 at 435.549 kb on + strand, within Dshi_0447 at 435.587 kb on - strand, within Dshi_0447 at 435.600 kb on + strand, within Dshi_0447 at 435.601 kb on - strand, within Dshi_0447 at 435.653 kb on - strand, within Dshi_0447 at 435.653 kb on - strand, within Dshi_0447 at 435.718 kb on - strand at 435.758 kb on - strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.789 kb on + strand at 435.791 kb on + strand at 435.797 kb on - strand at 435.797 kb on - strand at 435.840 kb on + strand at 435.840 kb on + strand at 435.841 kb on + strand at 435.848 kb on - strand at 435.867 kb on - strand at 435.880 kb on + strand at 435.884 kb on - strand at 435.885 kb on + strand at 435.891 kb on + strand at 435.893 kb on - strand at 435.899 kb on - strand at 435.933 kb on + strand at 435.933 kb on + strand at 435.935 kb on + strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.941 kb on - strand at 435.943 kb on - strand at 435.948 kb on + strand at 435.956 kb on - strand at 435.956 kb on - strand at 435.956 kb on - strand at 435.985 kb on + strand at 436.019 kb on + strand at 436.025 kb on - strand at 436.027 kb on - strand at 436.073 kb on + strand at 436.076 kb on - strand at 436.076 kb on - strand at 436.078 kb on + strand at 436.106 kb on + strand at 436.109 kb on + strand at 436.141 kb on + strand at 436.151 kb on + strand at 436.167 kb on + strand at 436.212 kb on - strand at 436.220 kb on + strand at 436.228 kb on - strand at 436.243 kb on + strand at 436.251 kb on - strand, within Dshi_0448 at 436.258 kb on + strand, within Dshi_0448 at 436.301 kb on + strand, within Dshi_0448 at 436.311 kb on + strand, within Dshi_0448 at 436.311 kb on + strand, within Dshi_0448 at 436.320 kb on + strand, within Dshi_0448 at 436.320 kb on + strand, within Dshi_0448 at 436.391 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.401 kb on + strand, within Dshi_0448 at 436.498 kb on + strand, within Dshi_0448 at 436.543 kb on + strand, within Dshi_0448 at 436.550 kb on + strand, within Dshi_0448 at 436.563 kb on + strand, within Dshi_0448 at 436.582 kb on + strand, within Dshi_0448 at 436.615 kb on - strand, within Dshi_0448 at 436.620 kb on - strand, within Dshi_0448 at 436.620 kb on - strand, within Dshi_0448 at 436.622 kb on + strand, within Dshi_0448 at 436.632 kb on + strand, within Dshi_0448 at 436.649 kb on + strand, within Dshi_0448 at 436.676 kb on - strand, within Dshi_0448 at 436.678 kb on + strand at 436.688 kb on + strand, within Dshi_0448 at 436.690 kb on + strand, within Dshi_0448 at 436.690 kb on + strand, within Dshi_0448 at 436.697 kb on - strand, within Dshi_0448 at 436.700 kb on + strand, within Dshi_0448 at 436.707 kb on + strand, within Dshi_0448 at 436.707 kb on + strand, within Dshi_0448 at 436.708 kb on - strand, within Dshi_0448 at 436.708 kb on - strand, within Dshi_0448 at 436.715 kb on - strand, within Dshi_0448 at 436.749 kb on + strand, within Dshi_0448 at 436.751 kb on + strand, within Dshi_0448 at 436.751 kb on + strand, within Dshi_0448 at 436.767 kb on + strand, within Dshi_0448
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 433,989 + -0.0 433,990 + -0.5 434,011 + -1.6 434,024 - +0.5 434,030 - +1.4 434,058 + -0.8 434,117 - Dshi_0445 0.18 -0.0 434,150 + Dshi_0445 0.26 +1.2 434,159 + Dshi_0445 0.29 -0.1 434,167 - Dshi_0445 0.31 -1.2 434,182 + Dshi_0445 0.35 -1.3 434,205 + Dshi_0445 0.40 -1.2 434,213 - Dshi_0445 0.42 +2.2 434,217 + Dshi_0445 0.44 -3.4 434,217 + Dshi_0445 0.44 +0.6 434,264 + Dshi_0445 0.55 +1.3 434,270 - Dshi_0445 0.57 -0.9 434,291 - Dshi_0445 0.62 -1.4 434,301 + Dshi_0445 0.65 -0.8 434,322 - Dshi_0445 0.70 -1.5 434,327 + Dshi_0445 0.72 -2.4 434,376 - Dshi_0445 0.84 -0.7 434,418 + -0.3 434,447 + -0.5 434,447 + +1.0 434,447 + -2.2 434,454 - +2.0 434,454 - -0.3 434,455 - -1.8 434,455 - -0.1 434,455 - -3.7 434,457 + -0.9 434,474 + +1.5 434,496 + +2.2 434,524 + -0.8 434,533 - -0.6 434,553 + -0.4 434,594 + -1.3 434,598 + -0.9 434,599 + +0.2 434,625 + Dshi_0446 0.14 -1.4 434,644 - Dshi_0446 0.18 -1.4 434,683 + Dshi_0446 0.28 -1.8 434,727 + Dshi_0446 0.38 +0.4 434,763 + Dshi_0446 0.47 -3.5 434,780 - Dshi_0446 0.51 +1.7 434,840 - Dshi_0446 0.66 -0.8 434,887 + Dshi_0446 0.77 -0.4 434,945 + +0.2 435,025 + -0.8 435,067 + Dshi_0447 0.11 -3.4 435,082 + Dshi_0447 0.13 +2.5 435,139 - Dshi_0447 0.20 +0.3 435,251 + Dshi_0447 0.34 -0.0 435,259 - Dshi_0447 0.35 -2.4 435,278 + Dshi_0447 0.38 -1.1 435,301 + Dshi_0447 0.41 -0.6 435,301 + Dshi_0447 0.41 -0.1 435,301 + Dshi_0447 0.41 -0.5 435,309 - Dshi_0447 0.42 -0.7 435,309 - Dshi_0447 0.42 -0.7 435,424 + Dshi_0447 0.56 -0.6 435,427 - Dshi_0447 0.57 -0.1 435,427 - Dshi_0447 0.57 -0.7 435,427 - Dshi_0447 0.57 +1.2 435,462 + Dshi_0447 0.61 +0.5 435,462 + Dshi_0447 0.61 -0.6 435,462 + Dshi_0447 0.61 -0.6 435,470 - Dshi_0447 0.62 -0.8 435,549 + Dshi_0447 0.72 -0.1 435,587 - Dshi_0447 0.77 -0.8 435,600 + Dshi_0447 0.78 -2.2 435,601 - Dshi_0447 0.79 -0.6 435,653 - Dshi_0447 0.85 -1.4 435,653 - Dshi_0447 0.85 +3.7 435,718 - -2.5 435,758 - -1.6 435,789 + -1.5 435,789 + +1.2 435,789 + -0.1 435,789 + -0.1 435,791 + +1.4 435,797 - +0.7 435,797 - -0.4 435,840 + +0.4 435,840 + -0.2 435,841 + +1.0 435,848 - +0.6 435,867 - -1.0 435,880 + -0.6 435,884 - -3.6 435,885 + -0.6 435,891 + +0.3 435,893 - -2.9 435,899 - -0.4 435,933 + +0.8 435,933 + -1.5 435,935 + -0.8 435,941 - -0.1 435,941 - -0.1 435,941 - -1.6 435,941 - -0.7 435,943 - +0.3 435,948 + -0.0 435,956 - -0.1 435,956 - +0.9 435,956 - -1.0 435,985 + -0.7 436,019 + -0.2 436,025 - +2.5 436,027 - -1.8 436,073 + -2.1 436,076 - -0.6 436,076 - -1.4 436,078 + -0.2 436,106 + -0.8 436,109 + -0.1 436,141 + +2.7 436,151 + -0.7 436,167 + -1.4 436,212 - -1.2 436,220 + -3.0 436,228 - -0.4 436,243 + +0.3 436,251 - Dshi_0448 0.10 -1.0 436,258 + Dshi_0448 0.11 +0.1 436,301 + Dshi_0448 0.13 -1.2 436,311 + Dshi_0448 0.14 +1.2 436,311 + Dshi_0448 0.14 +0.6 436,320 + Dshi_0448 0.15 -0.6 436,320 + Dshi_0448 0.15 -0.3 436,391 + Dshi_0448 0.19 -2.8 436,401 + Dshi_0448 0.20 +1.6 436,401 + Dshi_0448 0.20 +0.4 436,401 + Dshi_0448 0.20 -0.8 436,401 + Dshi_0448 0.20 -1.6 436,498 + Dshi_0448 0.26 -0.9 436,543 + Dshi_0448 0.28 -0.6 436,550 + Dshi_0448 0.29 -0.6 436,563 + Dshi_0448 0.30 +1.2 436,582 + Dshi_0448 0.31 -0.5 436,615 - Dshi_0448 0.33 +0.3 436,620 - Dshi_0448 0.33 -0.5 436,620 - Dshi_0448 0.33 -0.4 436,622 + Dshi_0448 0.33 -0.4 436,632 + Dshi_0448 0.34 +1.5 436,649 + Dshi_0448 0.35 +0.2 436,676 - Dshi_0448 0.37 -1.5 436,678 + -1.4 436,688 + Dshi_0448 0.37 -0.4 436,690 + Dshi_0448 0.37 -1.2 436,690 + Dshi_0448 0.37 -0.4 436,697 - Dshi_0448 0.38 +3.1 436,700 + Dshi_0448 0.38 +1.2 436,707 + Dshi_0448 0.39 -2.4 436,707 + Dshi_0448 0.39 -0.8 436,708 - Dshi_0448 0.39 +0.2 436,708 - Dshi_0448 0.39 -0.3 436,715 - Dshi_0448 0.39 +0.3 436,749 + Dshi_0448 0.41 -0.5 436,751 + Dshi_0448 0.41 +0.8 436,751 + Dshi_0448 0.41 -1.3 436,767 + Dshi_0448 0.42 -0.4
Or see this region's nucleotide sequence