Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0440 and Dshi_0441 are separated by 4 nucleotides Dshi_0441 and Dshi_0442 overlap by 11 nucleotides Dshi_0442 and Dshi_0443 overlap by 17 nucleotides Dshi_0443 and Dshi_0444 are separated by 37 nucleotides
Dshi_0440: Dshi_0440 - ATP synthase F0, C subunit (RefSeq), at 430,175 to 430,465
_0440
Dshi_0441: Dshi_0441 - H+transporting two-sector ATPase B/B' subunit (RefSeq), at 430,470 to 431,237
_0441
Dshi_0442: Dshi_0442 - ATP synthase F1, alpha subunit (RefSeq), at 431,227 to 432,756
_0442
Dshi_0443: Dshi_0443 - H+transporting two-sector ATPase gamma subunit (RefSeq), at 432,740 to 433,687
_0443
Dshi_0444: Dshi_0444 - hypothetical protein (RefSeq), at 433,725 to 434,012
_0444
Position (kb) 431
432
433 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 430.228 kb on - strand, within Dshi_0440 at 430.256 kb on - strand, within Dshi_0440 at 430.358 kb on + strand, within Dshi_0440 at 430.460 kb on + strand at 430.460 kb on + strand at 430.468 kb on - strand at 430.483 kb on + strand at 430.552 kb on + strand, within Dshi_0441 at 430.560 kb on - strand, within Dshi_0441 at 430.573 kb on + strand, within Dshi_0441 at 430.610 kb on + strand, within Dshi_0441 at 430.668 kb on + strand, within Dshi_0441 at 430.673 kb on + strand, within Dshi_0441 at 431.089 kb on - strand, within Dshi_0441 at 431.110 kb on - strand, within Dshi_0441 at 431.143 kb on + strand, within Dshi_0441 at 431.159 kb on - strand, within Dshi_0441 at 431.190 kb on - strand at 431.230 kb on + strand at 431.300 kb on + strand at 431.495 kb on - strand, within Dshi_0442 at 431.591 kb on + strand, within Dshi_0442 at 431.623 kb on - strand, within Dshi_0442 at 431.681 kb on + strand, within Dshi_0442 at 431.689 kb on - strand, within Dshi_0442 at 431.694 kb on + strand, within Dshi_0442 at 431.699 kb on + strand, within Dshi_0442 at 431.708 kb on + strand, within Dshi_0442 at 431.722 kb on - strand, within Dshi_0442 at 431.927 kb on + strand, within Dshi_0442 at 431.927 kb on + strand, within Dshi_0442 at 431.945 kb on - strand, within Dshi_0442 at 431.962 kb on - strand, within Dshi_0442 at 431.971 kb on + strand, within Dshi_0442 at 432.039 kb on + strand, within Dshi_0442 at 432.247 kb on + strand, within Dshi_0442 at 432.250 kb on - strand, within Dshi_0442 at 432.252 kb on + strand, within Dshi_0442 at 432.260 kb on - strand, within Dshi_0442 at 432.271 kb on - strand, within Dshi_0442 at 432.361 kb on + strand, within Dshi_0442 at 432.361 kb on + strand, within Dshi_0442 at 432.369 kb on - strand, within Dshi_0442 at 432.465 kb on + strand, within Dshi_0442 at 432.489 kb on + strand, within Dshi_0442 at 432.551 kb on + strand, within Dshi_0442 at 432.626 kb on + strand at 432.689 kb on + strand at 432.758 kb on - strand at 432.801 kb on - strand at 433.113 kb on - strand, within Dshi_0443 at 433.193 kb on + strand, within Dshi_0443 at 433.331 kb on + strand, within Dshi_0443 at 433.368 kb on + strand, within Dshi_0443 at 433.384 kb on + strand, within Dshi_0443 at 433.476 kb on + strand, within Dshi_0443 at 433.522 kb on + strand, within Dshi_0443 at 433.558 kb on + strand, within Dshi_0443 at 433.600 kb on + strand at 433.625 kb on + strand at 433.652 kb on + strand at 433.673 kb on + strand at 433.673 kb on + strand at 433.681 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 430,228 - Dshi_0440 0.18 +0.2 430,256 - Dshi_0440 0.28 -1.0 430,358 + Dshi_0440 0.63 -1.8 430,460 + +0.2 430,460 + -0.8 430,468 - -0.9 430,483 + +0.2 430,552 + Dshi_0441 0.11 +1.2 430,560 - Dshi_0441 0.12 -1.4 430,573 + Dshi_0441 0.13 +1.2 430,610 + Dshi_0441 0.18 +0.2 430,668 + Dshi_0441 0.26 -2.4 430,673 + Dshi_0441 0.26 -3.0 431,089 - Dshi_0441 0.81 +0.2 431,110 - Dshi_0441 0.83 -1.4 431,143 + Dshi_0441 0.88 -1.0 431,159 - Dshi_0441 0.90 -2.2 431,190 - +0.2 431,230 + -4.2 431,300 + -0.8 431,495 - Dshi_0442 0.18 -2.8 431,591 + Dshi_0442 0.24 -1.2 431,623 - Dshi_0442 0.26 +0.6 431,681 + Dshi_0442 0.30 -2.2 431,689 - Dshi_0442 0.30 -0.8 431,694 + Dshi_0442 0.31 +0.2 431,699 + Dshi_0442 0.31 +0.2 431,708 + Dshi_0442 0.31 -2.2 431,722 - Dshi_0442 0.32 -3.2 431,927 + Dshi_0442 0.46 +0.9 431,927 + Dshi_0442 0.46 +2.5 431,945 - Dshi_0442 0.47 -3.9 431,962 - Dshi_0442 0.48 -1.4 431,971 + Dshi_0442 0.49 -0.4 432,039 + Dshi_0442 0.53 -0.4 432,247 + Dshi_0442 0.67 +0.9 432,250 - Dshi_0442 0.67 +1.4 432,252 + Dshi_0442 0.67 -1.4 432,260 - Dshi_0442 0.68 +0.2 432,271 - Dshi_0442 0.68 +1.7 432,361 + Dshi_0442 0.74 +0.2 432,361 + Dshi_0442 0.74 -0.1 432,369 - Dshi_0442 0.75 -1.3 432,465 + Dshi_0442 0.81 -2.2 432,489 + Dshi_0442 0.82 -1.4 432,551 + Dshi_0442 0.87 +0.2 432,626 + +1.8 432,689 + -1.2 432,758 - +2.8 432,801 - +0.6 433,113 - Dshi_0443 0.39 -3.5 433,193 + Dshi_0443 0.48 -0.4 433,331 + Dshi_0443 0.62 +0.7 433,368 + Dshi_0443 0.66 +1.6 433,384 + Dshi_0443 0.68 -1.6 433,476 + Dshi_0443 0.78 -1.3 433,522 + Dshi_0443 0.82 +0.0 433,558 + Dshi_0443 0.86 -1.0 433,600 + +0.7 433,625 + -0.7 433,652 + -2.5 433,673 + +3.1 433,673 + +2.5 433,681 - -2.6
Or see this region's nucleotide sequence