Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0422

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0421 and Dshi_0422 are separated by 184 nucleotidesDshi_0422 and Dshi_0423 are separated by 77 nucleotides Dshi_0421: Dshi_0421 - phospholipase D/Transphosphatidylase (RefSeq), at 413,435 to 414,979 _0421 Dshi_0422: Dshi_0422 - Propeptide PepSY amd peptidase M4 (RefSeq), at 415,164 to 415,685 _0422 Dshi_0423: Dshi_0423 - phosphoesterase PA-phosphatase related (RefSeq), at 415,763 to 416,488 _0423 Position (kb) 415 416Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 414.170 kb on + strand, within Dshi_0421at 414.201 kb on - strand, within Dshi_0421at 414.210 kb on - strand, within Dshi_0421at 414.231 kb on + strand, within Dshi_0421at 414.248 kb on + strand, within Dshi_0421at 414.271 kb on + strand, within Dshi_0421at 414.282 kb on + strand, within Dshi_0421at 414.292 kb on + strand, within Dshi_0421at 414.295 kb on - strand, within Dshi_0421at 414.311 kb on - strand, within Dshi_0421at 414.335 kb on + strand, within Dshi_0421at 414.343 kb on - strand, within Dshi_0421at 414.343 kb on - strand, within Dshi_0421at 414.387 kb on + strand, within Dshi_0421at 414.424 kb on + strand, within Dshi_0421at 414.429 kb on + strand, within Dshi_0421at 414.535 kb on + strand, within Dshi_0421at 414.566 kb on + strand, within Dshi_0421at 414.568 kb on + strand, within Dshi_0421at 414.570 kb on + strand, within Dshi_0421at 414.577 kb on - strand, within Dshi_0421at 414.582 kb on + strand, within Dshi_0421at 414.590 kb on - strand, within Dshi_0421at 414.590 kb on - strand, within Dshi_0421at 414.644 kb on - strand, within Dshi_0421at 414.674 kb on + strand, within Dshi_0421at 414.674 kb on + strand, within Dshi_0421at 414.679 kb on + strand, within Dshi_0421at 414.681 kb on + strand, within Dshi_0421at 414.682 kb on - strand, within Dshi_0421at 414.682 kb on - strand, within Dshi_0421at 414.682 kb on - strand, within Dshi_0421at 414.682 kb on - strand, within Dshi_0421at 414.745 kb on + strand, within Dshi_0421at 414.748 kb on - strand, within Dshi_0421at 414.766 kb on + strand, within Dshi_0421at 414.799 kb on + strand, within Dshi_0421at 414.802 kb on - strand, within Dshi_0421at 414.813 kb on + strand, within Dshi_0421at 414.925 kb on - strandat 414.930 kb on - strandat 414.951 kb on + strandat 414.988 kb on + strandat 414.996 kb on - strandat 415.015 kb on - strandat 415.030 kb on - strandat 415.045 kb on + strandat 415.055 kb on + strandat 415.063 kb on - strandat 415.135 kb on + strandat 415.140 kb on + strandat 415.238 kb on - strand, within Dshi_0422at 415.298 kb on + strand, within Dshi_0422at 415.340 kb on - strand, within Dshi_0422at 415.346 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.408 kb on + strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.416 kb on - strand, within Dshi_0422at 415.418 kb on + strand, within Dshi_0422at 415.433 kb on - strand, within Dshi_0422at 415.439 kb on - strand, within Dshi_0422at 415.448 kb on + strand, within Dshi_0422at 415.453 kb on + strand, within Dshi_0422at 415.504 kb on + strand, within Dshi_0422at 415.516 kb on - strand, within Dshi_0422at 415.519 kb on + strand, within Dshi_0422at 415.538 kb on - strand, within Dshi_0422at 415.592 kb on + strand, within Dshi_0422at 415.646 kb on + strandat 415.747 kb on - strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.759 kb on + strandat 415.767 kb on - strandat 415.767 kb on - strandat 415.775 kb on - strandat 415.984 kb on - strand, within Dshi_0423at 415.984 kb on - strand, within Dshi_0423at 415.986 kb on - strand, within Dshi_0423at 416.006 kb on - strand, within Dshi_0423at 416.008 kb on + strand, within Dshi_0423at 416.015 kb on + strand, within Dshi_0423at 416.063 kb on + strand, within Dshi_0423at 416.063 kb on + strand, within Dshi_0423at 416.071 kb on - strand, within Dshi_0423at 416.071 kb on - strand, within Dshi_0423at 416.088 kb on + strand, within Dshi_0423at 416.088 kb on + strand, within Dshi_0423at 416.123 kb on - strand, within Dshi_0423at 416.219 kb on + strand, within Dshi_0423at 416.273 kb on - strand, within Dshi_0423at 416.297 kb on - strand, within Dshi_0423at 416.309 kb on + strand, within Dshi_0423at 416.317 kb on - strand, within Dshi_0423at 416.405 kb on - strand, within Dshi_0423at 416.425 kb on + strandat 416.427 kb on + strandat 416.433 kb on + strandat 416.505 kb on - strandat 416.512 kb on - strandat 416.530 kb on - strandat 416.557 kb on + strandat 416.562 kb on + strandat 416.565 kb on - strandat 416.629 kb on + strandat 416.631 kb on + strandat 416.668 kb on + strandat 416.675 kb on + strandat 416.676 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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414,170 + Dshi_0421 0.48 +0.1
414,201 - Dshi_0421 0.50 -0.0
414,210 - Dshi_0421 0.50 -1.5
414,231 + Dshi_0421 0.52 -0.0
414,248 + Dshi_0421 0.53 -1.2
414,271 + Dshi_0421 0.54 -0.8
414,282 + Dshi_0421 0.55 -2.9
414,292 + Dshi_0421 0.55 +0.3
414,295 - Dshi_0421 0.56 +2.5
414,311 - Dshi_0421 0.57 -0.7
414,335 + Dshi_0421 0.58 -0.6
414,343 - Dshi_0421 0.59 +0.2
414,343 - Dshi_0421 0.59 -1.3
414,387 + Dshi_0421 0.62 -0.2
414,424 + Dshi_0421 0.64 +1.3
414,429 + Dshi_0421 0.64 -2.5
414,535 + Dshi_0421 0.71 +0.2
414,566 + Dshi_0421 0.73 -0.3
414,568 + Dshi_0421 0.73 -0.7
414,570 + Dshi_0421 0.73 -3.3
414,577 - Dshi_0421 0.74 -0.0
414,582 + Dshi_0421 0.74 -0.1
414,590 - Dshi_0421 0.75 -2.8
414,590 - Dshi_0421 0.75 -1.1
414,644 - Dshi_0421 0.78 -0.5
414,674 + Dshi_0421 0.80 -1.9
414,674 + Dshi_0421 0.80 -0.5
414,679 + Dshi_0421 0.81 +2.5
414,681 + Dshi_0421 0.81 -1.0
414,682 - Dshi_0421 0.81 +1.8
414,682 - Dshi_0421 0.81 +2.5
414,682 - Dshi_0421 0.81 -0.7
414,682 - Dshi_0421 0.81 -1.4
414,745 + Dshi_0421 0.85 -0.6
414,748 - Dshi_0421 0.85 -1.2
414,766 + Dshi_0421 0.86 -0.8
414,799 + Dshi_0421 0.88 +0.0
414,802 - Dshi_0421 0.88 +0.7
414,813 + Dshi_0421 0.89 +0.9
414,925 - -0.0
414,930 - -0.6
414,951 + -1.7
414,988 + -0.0
414,996 - -0.7
415,015 - -1.6
415,030 - +0.2
415,045 + -0.8
415,055 + +3.0
415,063 - +0.2
415,135 + -0.5
415,140 + +0.2
415,238 - Dshi_0422 0.14 -1.1
415,298 + Dshi_0422 0.26 -1.5
415,340 - Dshi_0422 0.34 -0.5
415,346 + Dshi_0422 0.35 -1.5
415,408 + Dshi_0422 0.47 -3.5
415,408 + Dshi_0422 0.47 -0.2
415,408 + Dshi_0422 0.47 -2.3
415,408 + Dshi_0422 0.47 -2.1
415,408 + Dshi_0422 0.47 +0.5
415,408 + Dshi_0422 0.47 -1.2
415,416 - Dshi_0422 0.48 +1.8
415,416 - Dshi_0422 0.48 -1.4
415,416 - Dshi_0422 0.48 -1.1
415,416 - Dshi_0422 0.48 +2.6
415,416 - Dshi_0422 0.48 -0.4
415,418 + Dshi_0422 0.49 +0.1
415,433 - Dshi_0422 0.52 -1.9
415,439 - Dshi_0422 0.53 +1.2
415,448 + Dshi_0422 0.54 -0.3
415,453 + Dshi_0422 0.55 -0.9
415,504 + Dshi_0422 0.65 +1.8
415,516 - Dshi_0422 0.67 -0.8
415,519 + Dshi_0422 0.68 -0.1
415,538 - Dshi_0422 0.72 -0.2
415,592 + Dshi_0422 0.82 -1.4
415,646 + -0.4
415,747 - -0.2
415,759 + -0.1
415,759 + +0.5
415,759 + +1.8
415,759 + -0.1
415,767 - +0.5
415,767 - -1.8
415,775 - -1.0
415,984 - Dshi_0423 0.30 -0.1
415,984 - Dshi_0423 0.30 +0.1
415,986 - Dshi_0423 0.31 +0.2
416,006 - Dshi_0423 0.33 +0.6
416,008 + Dshi_0423 0.34 +0.2
416,015 + Dshi_0423 0.35 -1.8
416,063 + Dshi_0423 0.41 +2.2
416,063 + Dshi_0423 0.41 -0.2
416,071 - Dshi_0423 0.42 -2.6
416,071 - Dshi_0423 0.42 +1.8
416,088 + Dshi_0423 0.45 +0.8
416,088 + Dshi_0423 0.45 -0.6
416,123 - Dshi_0423 0.50 -0.9
416,219 + Dshi_0423 0.63 -1.7
416,273 - Dshi_0423 0.70 -0.6
416,297 - Dshi_0423 0.74 -1.1
416,309 + Dshi_0423 0.75 -1.0
416,317 - Dshi_0423 0.76 +1.5
416,405 - Dshi_0423 0.88 -0.5
416,425 + +0.5
416,427 + +0.1
416,433 + +0.2
416,505 - -0.6
416,512 - -0.4
416,530 - +0.3
416,557 + -1.0
416,562 + +1.2
416,565 - +0.4
416,629 + -2.1
416,631 + +1.8
416,668 + -1.4
416,675 + -1.3
416,676 - -0.2

Or see this region's nucleotide sequence