Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0328 and Dshi_0329 are separated by 121 nucleotides Dshi_0329 and Dshi_0330 are separated by 47 nucleotides
Dshi_0328: Dshi_0328 - 60 kDa inner membrane insertion protein (RefSeq), at 315,114 to 316,934
_0328
Dshi_0329: Dshi_0329 - diguanylate cyclase/phosphodiesterase (RefSeq), at 317,056 to 318,645
_0329
Dshi_0330: Dshi_0330 - PP-loop domain protein (RefSeq), at 318,693 to 319,556
_0330
Position (kb) 317
318
319 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 317.063 kb on + strand at 317.242 kb on + strand, within Dshi_0329 at 317.300 kb on + strand at 317.333 kb on + strand, within Dshi_0329 at 317.517 kb on + strand, within Dshi_0329 at 317.556 kb on + strand, within Dshi_0329 at 317.564 kb on - strand, within Dshi_0329 at 317.564 kb on - strand, within Dshi_0329 at 317.745 kb on - strand, within Dshi_0329 at 317.746 kb on + strand, within Dshi_0329 at 317.749 kb on - strand, within Dshi_0329 at 317.771 kb on + strand, within Dshi_0329 at 317.779 kb on - strand, within Dshi_0329 at 317.841 kb on - strand, within Dshi_0329 at 317.848 kb on - strand, within Dshi_0329 at 317.853 kb on - strand, within Dshi_0329 at 317.870 kb on - strand, within Dshi_0329 at 317.985 kb on + strand, within Dshi_0329 at 318.006 kb on + strand, within Dshi_0329 at 318.141 kb on + strand, within Dshi_0329 at 318.263 kb on + strand, within Dshi_0329 at 318.314 kb on + strand, within Dshi_0329 at 318.323 kb on - strand, within Dshi_0329 at 318.352 kb on - strand, within Dshi_0329 at 318.491 kb on + strand at 318.524 kb on - strand at 318.607 kb on + strand at 318.615 kb on - strand at 318.617 kb on - strand at 318.648 kb on + strand at 318.672 kb on + strand at 318.724 kb on + strand at 318.734 kb on + strand at 318.812 kb on + strand, within Dshi_0330 at 318.812 kb on + strand, within Dshi_0330 at 318.943 kb on + strand, within Dshi_0330 at 319.101 kb on - strand, within Dshi_0330 at 319.204 kb on - strand, within Dshi_0330 at 319.234 kb on + strand, within Dshi_0330 at 319.330 kb on + strand, within Dshi_0330 at 319.330 kb on + strand, within Dshi_0330 at 319.361 kb on + strand at 319.562 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 317,063 + -0.7 317,242 + Dshi_0329 0.12 +1.3 317,300 + -1.5 317,333 + Dshi_0329 0.17 -0.4 317,517 + Dshi_0329 0.29 -0.2 317,556 + Dshi_0329 0.31 -0.1 317,564 - Dshi_0329 0.32 -0.3 317,564 - Dshi_0329 0.32 -0.5 317,745 - Dshi_0329 0.43 -1.0 317,746 + Dshi_0329 0.43 -1.3 317,749 - Dshi_0329 0.44 +0.5 317,771 + Dshi_0329 0.45 +0.8 317,779 - Dshi_0329 0.45 +4.0 317,841 - Dshi_0329 0.49 -0.6 317,848 - Dshi_0329 0.50 +2.0 317,853 - Dshi_0329 0.50 +1.7 317,870 - Dshi_0329 0.51 -1.5 317,985 + Dshi_0329 0.58 -0.8 318,006 + Dshi_0329 0.60 +1.5 318,141 + Dshi_0329 0.68 -0.7 318,263 + Dshi_0329 0.76 -4.1 318,314 + Dshi_0329 0.79 +2.5 318,323 - Dshi_0329 0.80 -2.5 318,352 - Dshi_0329 0.82 +1.1 318,491 + -0.5 318,524 - -1.7 318,607 + +0.5 318,615 - +1.2 318,617 - +1.6 318,648 + -1.4 318,672 + -3.7 318,724 + +0.1 318,734 + -0.5 318,812 + Dshi_0330 0.14 -1.1 318,812 + Dshi_0330 0.14 -1.7 318,943 + Dshi_0330 0.29 -2.3 319,101 - Dshi_0330 0.47 -0.2 319,204 - Dshi_0330 0.59 -0.0 319,234 + Dshi_0330 0.63 -1.7 319,330 + Dshi_0330 0.74 +2.9 319,330 + Dshi_0330 0.74 -1.5 319,361 + -1.5 319,562 - -0.6
Or see this region's nucleotide sequence