Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0268

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0267 and Dshi_0268 are separated by 492 nucleotidesDshi_0268 and Dshi_0269 are separated by 97 nucleotides Dshi_0267: Dshi_0267 - hypothetical protein (RefSeq), at 262,945 to 264,294 _0267 Dshi_0268: Dshi_0268 - DNA-directed RNA polymerase, beta subunit (RefSeq), at 264,787 to 268,923 _0268 Dshi_0269: Dshi_0269 - DNA-directed RNA polymerase, beta' subunit (RefSeq), at 269,021 to 273,268 _0269 Position (kb) 264 265 266 267 268 269Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 263.890 kb on + strand, within Dshi_0267at 263.955 kb on - strand, within Dshi_0267at 263.981 kb on - strand, within Dshi_0267at 264.049 kb on + strand, within Dshi_0267at 264.057 kb on - strand, within Dshi_0267at 264.067 kb on - strand, within Dshi_0267at 264.115 kb on - strand, within Dshi_0267at 264.123 kb on + strand, within Dshi_0267at 264.152 kb on + strand, within Dshi_0267at 264.152 kb on + strand, within Dshi_0267at 264.204 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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263,890 + Dshi_0267 0.70 -2.1
263,955 - Dshi_0267 0.75 -0.7
263,981 - Dshi_0267 0.77 +0.1
264,049 + Dshi_0267 0.82 -0.2
264,057 - Dshi_0267 0.82 -0.3
264,067 - Dshi_0267 0.83 +0.5
264,115 - Dshi_0267 0.87 -1.0
264,123 + Dshi_0267 0.87 -3.4
264,152 + Dshi_0267 0.89 +0.5
264,152 + Dshi_0267 0.89 -0.5
264,204 + +3.2

Or see this region's nucleotide sequence