Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0151

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0150 and Dshi_0151 are separated by 37 nucleotidesDshi_0151 and Dshi_0152 overlap by 4 nucleotidesDshi_0152 and Dshi_0153 are separated by 80 nucleotides Dshi_0150: Dshi_0150 - Lytic transglycosylase catalytic (RefSeq), at 149,400 to 151,349 _0150 Dshi_0151: Dshi_0151 - protein of unknown function DUF6 transmembrane (RefSeq), at 151,387 to 152,265 _0151 Dshi_0152: Dshi_0152 - protein of unknown function DUF752 (RefSeq), at 152,262 to 152,954 _0152 Dshi_0153: Dshi_0153 - FAD dependent oxidoreductase (RefSeq), at 153,035 to 154,093 _0153 Position (kb) 151 152 153Strain fitness (log2 ratio) -3 -2 -1 0 1at 151.306 kb on - strandat 151.419 kb on + strandat 151.442 kb on + strandat 151.464 kb on + strandat 151.517 kb on + strand, within Dshi_0151at 151.525 kb on - strand, within Dshi_0151at 151.543 kb on + strand, within Dshi_0151at 151.546 kb on - strand, within Dshi_0151at 151.663 kb on + strand, within Dshi_0151at 151.671 kb on - strand, within Dshi_0151at 151.776 kb on - strand, within Dshi_0151at 151.992 kb on - strand, within Dshi_0151at 152.189 kb on + strandat 152.263 kb on + strandat 152.328 kb on - strandat 152.455 kb on + strand, within Dshi_0152at 152.749 kb on + strand, within Dshi_0152at 152.782 kb on + strand, within Dshi_0152at 152.786 kb on - strand, within Dshi_0152at 152.801 kb on + strand, within Dshi_0152at 152.902 kb on - strandat 152.907 kb on - strandat 152.921 kb on + strandat 152.958 kb on + strandat 152.966 kb on - strandat 152.973 kb on + strandat 153.097 kb on - strandat 153.108 kb on + strandat 153.118 kb on + strandat 153.126 kb on - strandat 153.143 kb on - strand, within Dshi_0153at 153.145 kb on - strand, within Dshi_0153

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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151,306 - +0.9
151,419 + +0.6
151,442 + +1.6
151,464 + -2.8
151,517 + Dshi_0151 0.15 -0.4
151,525 - Dshi_0151 0.16 -2.1
151,543 + Dshi_0151 0.18 -2.0
151,546 - Dshi_0151 0.18 +0.6
151,663 + Dshi_0151 0.31 -1.1
151,671 - Dshi_0151 0.32 +0.6
151,776 - Dshi_0151 0.44 +0.6
151,992 - Dshi_0151 0.69 -1.4
152,189 + +1.6
152,263 + -1.8
152,328 - -2.2
152,455 + Dshi_0152 0.28 +0.6
152,749 + Dshi_0152 0.70 -1.8
152,782 + Dshi_0152 0.75 +0.6
152,786 - Dshi_0152 0.76 +0.6
152,801 + Dshi_0152 0.78 -1.7
152,902 - -1.4
152,907 - -0.0
152,921 + +1.6
152,958 + +0.1
152,966 - +0.9
152,973 + -2.0
153,097 - -1.8
153,108 + +0.6
153,118 + +1.6
153,126 - -0.0
153,143 - Dshi_0153 0.10 -2.4
153,145 - Dshi_0153 0.10 +0.6

Or see this region's nucleotide sequence