Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0133 and Dshi_0134 overlap by 4 nucleotides Dshi_0134 and Dshi_0135 overlap by 1 nucleotides
Dshi_0133: Dshi_0133 - type I secretion target repeat protein (RefSeq), at 132,102 to 133,061
_0133
Dshi_0134: Dshi_0134 - transcriptional coactivator/pterin dehydratase (RefSeq), at 133,058 to 133,351
_0134
Dshi_0135: Dshi_0135 - protein of unknown function DUF482 (RefSeq), at 133,351 to 134,571
_0135
Position (kb) 133
134 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 132.135 kb on + strand at 132.143 kb on - strand at 132.272 kb on + strand, within Dshi_0133 at 132.323 kb on + strand, within Dshi_0133 at 132.331 kb on - strand, within Dshi_0133 at 132.331 kb on - strand, within Dshi_0133 at 132.343 kb on + strand, within Dshi_0133 at 132.345 kb on + strand, within Dshi_0133 at 132.345 kb on + strand, within Dshi_0133 at 132.357 kb on + strand, within Dshi_0133 at 132.727 kb on + strand, within Dshi_0133 at 132.782 kb on + strand, within Dshi_0133 at 132.795 kb on + strand, within Dshi_0133 at 132.805 kb on + strand, within Dshi_0133 at 132.839 kb on - strand, within Dshi_0133 at 133.092 kb on + strand, within Dshi_0134 at 133.191 kb on + strand, within Dshi_0134 at 133.298 kb on + strand, within Dshi_0134 at 133.298 kb on + strand, within Dshi_0134 at 133.349 kb on + strand at 133.380 kb on + strand at 133.380 kb on + strand at 133.552 kb on - strand, within Dshi_0135 at 133.634 kb on - strand, within Dshi_0135 at 133.635 kb on + strand, within Dshi_0135 at 133.635 kb on + strand, within Dshi_0135 at 133.645 kb on - strand, within Dshi_0135 at 133.711 kb on + strand, within Dshi_0135 at 133.712 kb on + strand, within Dshi_0135 at 133.781 kb on + strand, within Dshi_0135 at 133.896 kb on - strand, within Dshi_0135 at 134.095 kb on + strand, within Dshi_0135 at 134.103 kb on - strand, within Dshi_0135 at 134.116 kb on - strand, within Dshi_0135 at 134.137 kb on + strand, within Dshi_0135 at 134.178 kb on + strand, within Dshi_0135 at 134.178 kb on + strand, within Dshi_0135 at 134.215 kb on - strand, within Dshi_0135 at 134.215 kb on - strand, within Dshi_0135 at 134.236 kb on + strand, within Dshi_0135 at 134.331 kb on + strand, within Dshi_0135 at 134.339 kb on - strand, within Dshi_0135
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 132,135 + +0.2 132,143 - -0.0 132,272 + Dshi_0133 0.18 +0.6 132,323 + Dshi_0133 0.23 +1.2 132,331 - Dshi_0133 0.24 -0.4 132,331 - Dshi_0133 0.24 -0.0 132,343 + Dshi_0133 0.25 -0.6 132,345 + Dshi_0133 0.25 -0.3 132,345 + Dshi_0133 0.25 +0.6 132,357 + Dshi_0133 0.27 -0.6 132,727 + Dshi_0133 0.65 -2.2 132,782 + Dshi_0133 0.71 -0.2 132,795 + Dshi_0133 0.72 -0.8 132,805 + Dshi_0133 0.73 -0.5 132,839 - Dshi_0133 0.77 +0.9 133,092 + Dshi_0134 0.12 +3.4 133,191 + Dshi_0134 0.45 -0.0 133,298 + Dshi_0134 0.82 +0.3 133,298 + Dshi_0134 0.82 +2.2 133,349 + -0.3 133,380 + -0.4 133,380 + +0.2 133,552 - Dshi_0135 0.16 +0.6 133,634 - Dshi_0135 0.23 -0.4 133,635 + Dshi_0135 0.23 -3.1 133,635 + Dshi_0135 0.23 +0.8 133,645 - Dshi_0135 0.24 -1.2 133,711 + Dshi_0135 0.29 -1.0 133,712 + Dshi_0135 0.30 -1.8 133,781 + Dshi_0135 0.35 +0.4 133,896 - Dshi_0135 0.45 +0.2 134,095 + Dshi_0135 0.61 -0.4 134,103 - Dshi_0135 0.62 +0.3 134,116 - Dshi_0135 0.63 +3.4 134,137 + Dshi_0135 0.64 -1.1 134,178 + Dshi_0135 0.68 -0.9 134,178 + Dshi_0135 0.68 -0.2 134,215 - Dshi_0135 0.71 +0.2 134,215 - Dshi_0135 0.71 +1.0 134,236 + Dshi_0135 0.72 -2.6 134,331 + Dshi_0135 0.80 -0.6 134,339 - Dshi_0135 0.81 +0.6
Or see this region's nucleotide sequence