Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0125 and Dshi_0126 are separated by 103 nucleotides Dshi_0126 and Dshi_0127 overlap by 4 nucleotides Dshi_0127 and Dshi_0128 are separated by 118 nucleotides Dshi_0128 and Dshi_0129 overlap by 29 nucleotides
Dshi_0125: Dshi_0125 - NADH:flavin oxidoreductase/NADH oxidase (RefSeq), at 122,863 to 124,881
_0125
Dshi_0126: Dshi_0126 - hypothetical protein (RefSeq), at 124,985 to 125,401
_0126
Dshi_0127: Dshi_0127 - hypothetical protein (RefSeq), at 125,398 to 126,168
_0127
Dshi_0128: Dshi_0128 - hypothetical protein (RefSeq), at 126,287 to 126,946
_0128
Dshi_0129: Dshi_0129 - dihydroxy-acid dehydratase (RefSeq), at 126,918 to 128,651
_0129
Position (kb)
125
126
127 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 124.409 kb on - strand, within Dshi_0125 at 124.449 kb on + strand, within Dshi_0125 at 124.556 kb on + strand, within Dshi_0125 at 124.645 kb on - strand, within Dshi_0125 at 124.660 kb on - strand, within Dshi_0125 at 124.756 kb on - strand at 124.920 kb on + strand at 124.928 kb on - strand at 124.936 kb on - strand at 124.952 kb on - strand at 125.062 kb on - strand, within Dshi_0126 at 125.095 kb on + strand, within Dshi_0126 at 125.125 kb on - strand, within Dshi_0126 at 125.198 kb on + strand, within Dshi_0126 at 125.283 kb on - strand, within Dshi_0126 at 125.761 kb on - strand, within Dshi_0127 at 125.911 kb on + strand, within Dshi_0127 at 126.121 kb on - strand at 126.155 kb on - strand at 126.181 kb on + strand at 126.212 kb on - strand at 126.277 kb on - strand at 126.278 kb on - strand at 126.502 kb on + strand, within Dshi_0128 at 126.510 kb on - strand, within Dshi_0128 at 126.654 kb on + strand, within Dshi_0128 at 126.686 kb on - strand, within Dshi_0128
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 124,409 - Dshi_0125 0.77 +0.9 124,449 + Dshi_0125 0.79 -2.2 124,556 + Dshi_0125 0.84 +0.6 124,645 - Dshi_0125 0.88 -2.2 124,660 - Dshi_0125 0.89 -1.2 124,756 - +0.6 124,920 + +0.6 124,928 - -1.8 124,936 - -0.2 124,952 - +1.6 125,062 - Dshi_0126 0.18 -0.8 125,095 + Dshi_0126 0.26 -3.8 125,125 - Dshi_0126 0.34 +0.2 125,198 + Dshi_0126 0.51 +1.3 125,283 - Dshi_0126 0.71 +0.6 125,761 - Dshi_0127 0.47 -2.2 125,911 + Dshi_0127 0.67 -2.0 126,121 - +0.6 126,155 - -0.7 126,181 + +0.1 126,212 - +2.0 126,277 - +0.6 126,278 - -1.6 126,502 + Dshi_0128 0.33 +1.6 126,510 - Dshi_0128 0.34 -1.0 126,654 + Dshi_0128 0.56 +1.1 126,686 - Dshi_0128 0.60 +2.2
Or see this region's nucleotide sequence