Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0116 and Dshi_0117 are separated by 851 nucleotides Dshi_0117 and Dshi_0118 are separated by 46 nucleotides Dshi_0118 and Dshi_0119 are separated by 48 nucleotides
Dshi_0116: Dshi_0116 - TRAP dicarboxylate transporter- DctP subunit (RefSeq), at 114,678 to 115,730
_0116
Dshi_0117: Dshi_0117 - methionine aminopeptidase, type I (RefSeq), at 116,582 to 117,397
_0117
Dshi_0118: Dshi_0118 - sugar fermentation stimulation protein (RefSeq), at 117,444 to 118,178
_0118
Dshi_0119: Dshi_0119 - molybdopterin binding domain (RefSeq), at 118,227 to 118,955
_0119
Position (kb)
116
117
118 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3 at 115.698 kb on + strand at 115.748 kb on - strand at 115.751 kb on + strand at 115.774 kb on - strand at 115.791 kb on - strand at 115.895 kb on + strand at 115.919 kb on - strand at 115.955 kb on - strand at 116.017 kb on + strand at 116.023 kb on + strand at 116.133 kb on + strand at 116.201 kb on + strand at 116.221 kb on + strand at 116.491 kb on + strand at 116.545 kb on + strand at 116.553 kb on - strand at 116.562 kb on + strand at 116.570 kb on - strand at 117.368 kb on + strand at 117.508 kb on - strand at 117.609 kb on - strand, within Dshi_0118 at 117.615 kb on - strand, within Dshi_0118 at 117.617 kb on - strand, within Dshi_0118 at 117.721 kb on - strand, within Dshi_0118 at 117.736 kb on + strand, within Dshi_0118 at 117.744 kb on - strand, within Dshi_0118 at 117.776 kb on + strand, within Dshi_0118 at 117.867 kb on - strand, within Dshi_0118 at 117.952 kb on + strand, within Dshi_0118 at 117.956 kb on - strand, within Dshi_0118 at 118.096 kb on - strand, within Dshi_0118 at 118.101 kb on + strand, within Dshi_0118 at 118.109 kb on - strand at 118.109 kb on - strand at 118.180 kb on + strand at 118.185 kb on + strand at 118.187 kb on + strand at 118.193 kb on - strand at 118.195 kb on - strand at 118.216 kb on - strand at 118.216 kb on - strand at 118.216 kb on - strand at 118.217 kb on + strand at 118.225 kb on - strand at 118.289 kb on + strand at 118.378 kb on - strand, within Dshi_0119
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 115,698 + -0.4 115,748 - +1.6 115,751 + -0.9 115,774 - -1.4 115,791 - -1.8 115,895 + -0.1 115,919 - +0.6 115,955 - -0.1 116,017 + -0.5 116,023 + +0.6 116,133 + -1.2 116,201 + -3.2 116,221 + +0.0 116,491 + -0.4 116,545 + +0.8 116,553 - -1.2 116,562 + -0.4 116,570 - -1.7 117,368 + +0.6 117,508 - -2.2 117,609 - Dshi_0118 0.22 -1.0 117,615 - Dshi_0118 0.23 +0.6 117,617 - Dshi_0118 0.24 -0.8 117,721 - Dshi_0118 0.38 +2.6 117,736 + Dshi_0118 0.40 -0.3 117,744 - Dshi_0118 0.41 -2.2 117,776 + Dshi_0118 0.45 +1.5 117,867 - Dshi_0118 0.58 +1.6 117,952 + Dshi_0118 0.69 -1.5 117,956 - Dshi_0118 0.70 -0.7 118,096 - Dshi_0118 0.89 +0.2 118,101 + Dshi_0118 0.89 -0.2 118,109 - -3.4 118,109 - +1.2 118,180 + -0.4 118,185 + -0.6 118,187 + +1.9 118,193 - +0.6 118,195 - -0.2 118,216 - -1.8 118,216 - -1.1 118,216 - -0.8 118,217 + -1.0 118,225 - -2.9 118,289 + +3.4 118,378 - Dshi_0119 0.21 +1.0
Or see this region's nucleotide sequence