Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0082

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0081 and Dshi_0082 are separated by 75 nucleotidesDshi_0082 and Dshi_0083 are separated by 105 nucleotidesDshi_0083 and Dshi_0084 are separated by 37 nucleotides Dshi_0081: Dshi_0081 - 3-isopropylmalate dehydrogenase (RefSeq), at 80,080 to 81,186 _0081 Dshi_0082: Dshi_0082 - hypothetical protein (RefSeq), at 81,262 to 82,386 _0082 Dshi_0083: Dshi_0083 - 3-isopropylmalate dehydratase, small subunit (RefSeq), at 82,492 to 83,097 _0083 Dshi_0084: Dshi_0084 - hypothetical protein (RefSeq), at 83,135 to 83,662 _0084 Position (kb) 81 82 83Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 80.596 kb on + strand, within Dshi_0081at 81.250 kb on - strandat 81.344 kb on + strandat 81.352 kb on - strandat 81.357 kb on - strandat 81.375 kb on + strand, within Dshi_0082at 81.379 kb on - strand, within Dshi_0082at 81.388 kb on - strand, within Dshi_0082at 81.497 kb on + strand, within Dshi_0082at 81.603 kb on + strand, within Dshi_0082at 81.909 kb on - strand, within Dshi_0082at 81.960 kb on - strand, within Dshi_0082at 82.000 kb on + strand, within Dshi_0082at 82.000 kb on - strand, within Dshi_0082at 82.143 kb on - strand, within Dshi_0082at 82.170 kb on - strand, within Dshi_0082at 82.260 kb on + strand, within Dshi_0082at 82.260 kb on + strand, within Dshi_0082at 82.260 kb on + strand, within Dshi_0082at 82.262 kb on - strand, within Dshi_0082at 82.345 kb on + strandat 82.350 kb on + strandat 82.353 kb on - strandat 82.455 kb on + strandat 82.516 kb on + strandat 82.516 kb on + strandat 82.524 kb on - strandat 82.551 kb on + strandat 82.559 kb on - strand, within Dshi_0083at 82.559 kb on - strand, within Dshi_0083at 83.016 kb on + strand, within Dshi_0083at 83.167 kb on - strandat 83.191 kb on - strand, within Dshi_0084at 83.213 kb on + strand, within Dshi_0084at 83.213 kb on - strand, within Dshi_0084at 83.213 kb on - strand, within Dshi_0084at 83.330 kb on - strand, within Dshi_0084at 83.341 kb on + strand, within Dshi_0084

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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80,596 + Dshi_0081 0.47 +0.6
81,250 - +1.0
81,344 + +2.2
81,352 - +0.4
81,357 - -0.7
81,375 + Dshi_0082 0.10 +1.6
81,379 - Dshi_0082 0.10 -1.6
81,388 - Dshi_0082 0.11 -0.3
81,497 + Dshi_0082 0.21 -0.8
81,603 + Dshi_0082 0.30 -0.1
81,909 - Dshi_0082 0.58 -0.8
81,960 - Dshi_0082 0.62 -1.9
82,000 + Dshi_0082 0.66 -1.8
82,000 - Dshi_0082 0.66 -0.6
82,143 - Dshi_0082 0.78 +1.0
82,170 - Dshi_0082 0.81 -1.0
82,260 + Dshi_0082 0.89 -1.3
82,260 + Dshi_0082 0.89 -2.9
82,260 + Dshi_0082 0.89 -0.9
82,262 - Dshi_0082 0.89 +1.2
82,345 + +1.6
82,350 + -0.1
82,353 - +0.1
82,455 + -2.2
82,516 + -1.3
82,516 + -0.6
82,524 - -1.4
82,551 + +0.6
82,559 - Dshi_0083 0.11 +0.6
82,559 - Dshi_0083 0.11 +3.6
83,016 + Dshi_0083 0.86 +0.6
83,167 - +0.6
83,191 - Dshi_0084 0.11 -0.2
83,213 + Dshi_0084 0.15 +2.2
83,213 - Dshi_0084 0.15 -0.7
83,213 - Dshi_0084 0.15 -0.1
83,330 - Dshi_0084 0.37 +0.6
83,341 + Dshi_0084 0.39 -0.4

Or see this region's nucleotide sequence