Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0077

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0075 and Dshi_0076 are separated by 392 nucleotidesDshi_0076 and Dshi_0077 are separated by 12 nucleotidesDshi_0077 and Dshi_0078 are separated by 42 nucleotidesDshi_0078 and Dshi_R0001 are separated by 329 nucleotides Dshi_0075: Dshi_0075 - hypothetical protein (RefSeq), at 75,136 to 75,378 _0075 Dshi_0076: Dshi_0076 - hypothetical protein (RefSeq), at 75,771 to 76,007 _0076 Dshi_0077: Dshi_0077 - hypothetical protein (RefSeq), at 76,020 to 76,910 _0077 Dshi_0078: Dshi_0078 - hypothetical protein (RefSeq), at 76,953 to 77,537 _0078 Dshi_R0001: Dshi_R0001 - tRNA-Pro (RefSeq), at 77,867 to 77,943 _R0001 Position (kb) 76 77Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 75.102 kb on + strandat 75.119 kb on + strandat 75.191 kb on - strand, within Dshi_0075at 75.246 kb on + strand, within Dshi_0075at 75.246 kb on + strand, within Dshi_0075at 75.259 kb on - strand, within Dshi_0075at 75.278 kb on - strand, within Dshi_0075at 75.293 kb on - strand, within Dshi_0075at 75.333 kb on - strand, within Dshi_0075at 75.411 kb on - strandat 75.418 kb on - strandat 75.421 kb on - strandat 75.451 kb on + strandat 75.459 kb on - strandat 75.502 kb on - strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.508 kb on + strandat 75.553 kb on + strandat 75.575 kb on + strandat 75.583 kb on - strandat 75.685 kb on - strandat 75.807 kb on + strand, within Dshi_0076at 75.832 kb on + strand, within Dshi_0076at 75.837 kb on + strand, within Dshi_0076at 75.840 kb on - strand, within Dshi_0076at 75.845 kb on - strand, within Dshi_0076at 75.894 kb on - strand, within Dshi_0076at 75.965 kb on - strand, within Dshi_0076at 76.123 kb on + strand, within Dshi_0077at 76.381 kb on - strand, within Dshi_0077at 76.439 kb on - strand, within Dshi_0077at 76.484 kb on - strand, within Dshi_0077at 76.551 kb on + strand, within Dshi_0077at 76.819 kb on - strand, within Dshi_0077at 77.047 kb on + strand, within Dshi_0078at 77.057 kb on + strand, within Dshi_0078at 77.155 kb on - strand, within Dshi_0078at 77.196 kb on - strand, within Dshi_0078at 77.219 kb on - strand, within Dshi_0078at 77.294 kb on + strand, within Dshi_0078at 77.341 kb on + strand, within Dshi_0078at 77.478 kb on + strand, within Dshi_0078at 77.483 kb on + strandat 77.483 kb on + strandat 77.483 kb on + strandat 77.483 kb on + strandat 77.491 kb on - strandat 77.491 kb on - strandat 77.498 kb on + strandat 77.602 kb on - strandat 77.633 kb on - strandat 77.655 kb on - strandat 77.655 kb on - strandat 77.655 kb on - strandat 77.683 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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75,102 + +0.5
75,119 + -1.6
75,191 - Dshi_0075 0.23 -0.4
75,246 + Dshi_0075 0.45 -0.2
75,246 + Dshi_0075 0.45 -1.6
75,259 - Dshi_0075 0.51 +1.0
75,278 - Dshi_0075 0.58 +0.6
75,293 - Dshi_0075 0.65 -0.1
75,333 - Dshi_0075 0.81 -1.0
75,411 - +0.1
75,418 - +0.6
75,421 - -0.4
75,451 + -0.3
75,459 - +0.6
75,502 - -0.9
75,508 + -0.6
75,508 + -0.9
75,508 + -1.0
75,508 + +2.6
75,553 + +0.3
75,575 + +3.4
75,583 - +1.8
75,685 - -1.4
75,807 + Dshi_0076 0.15 -1.4
75,832 + Dshi_0076 0.26 +0.2
75,837 + Dshi_0076 0.28 +1.0
75,840 - Dshi_0076 0.29 +0.2
75,845 - Dshi_0076 0.31 +0.1
75,894 - Dshi_0076 0.52 -2.0
75,965 - Dshi_0076 0.82 -0.8
76,123 + Dshi_0077 0.12 +0.3
76,381 - Dshi_0077 0.41 +0.5
76,439 - Dshi_0077 0.47 +2.2
76,484 - Dshi_0077 0.52 -4.1
76,551 + Dshi_0077 0.60 +2.5
76,819 - Dshi_0077 0.90 +1.4
77,047 + Dshi_0078 0.16 -0.4
77,057 + Dshi_0078 0.18 +1.6
77,155 - Dshi_0078 0.35 +0.1
77,196 - Dshi_0078 0.42 +0.2
77,219 - Dshi_0078 0.45 -1.1
77,294 + Dshi_0078 0.58 +1.1
77,341 + Dshi_0078 0.66 -2.1
77,478 + Dshi_0078 0.90 -4.6
77,483 + +0.4
77,483 + -1.2
77,483 + +1.6
77,483 + +0.6
77,491 - -0.4
77,491 - +1.1
77,498 + +0.8
77,602 - +0.6
77,633 - +1.8
77,655 - +0.4
77,655 - -1.8
77,655 - -0.0
77,683 + -0.1

Or see this region's nucleotide sequence