Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0075 and Dshi_0076 are separated by 392 nucleotides Dshi_0076 and Dshi_0077 are separated by 12 nucleotides Dshi_0077 and Dshi_0078 are separated by 42 nucleotides Dshi_0078 and Dshi_R0001 are separated by 329 nucleotides
Dshi_0075: Dshi_0075 - hypothetical protein (RefSeq), at 75,136 to 75,378
_0075
Dshi_0076: Dshi_0076 - hypothetical protein (RefSeq), at 75,771 to 76,007
_0076
Dshi_0077: Dshi_0077 - hypothetical protein (RefSeq), at 76,020 to 76,910
_0077
Dshi_0078: Dshi_0078 - hypothetical protein (RefSeq), at 76,953 to 77,537
_0078
Dshi_R0001: Dshi_R0001 - tRNA-Pro (RefSeq), at 77,867 to 77,943
_R0001
Position (kb)
76
77 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2
3 at 75.102 kb on + strand at 75.119 kb on + strand at 75.191 kb on - strand, within Dshi_0075 at 75.246 kb on + strand, within Dshi_0075 at 75.246 kb on + strand, within Dshi_0075 at 75.259 kb on - strand, within Dshi_0075 at 75.278 kb on - strand, within Dshi_0075 at 75.293 kb on - strand, within Dshi_0075 at 75.333 kb on - strand, within Dshi_0075 at 75.411 kb on - strand at 75.418 kb on - strand at 75.421 kb on - strand at 75.451 kb on + strand at 75.459 kb on - strand at 75.502 kb on - strand at 75.508 kb on + strand at 75.508 kb on + strand at 75.508 kb on + strand at 75.508 kb on + strand at 75.553 kb on + strand at 75.575 kb on + strand at 75.583 kb on - strand at 75.685 kb on - strand at 75.807 kb on + strand, within Dshi_0076 at 75.832 kb on + strand, within Dshi_0076 at 75.837 kb on + strand, within Dshi_0076 at 75.840 kb on - strand, within Dshi_0076 at 75.845 kb on - strand, within Dshi_0076 at 75.894 kb on - strand, within Dshi_0076 at 75.965 kb on - strand, within Dshi_0076 at 76.123 kb on + strand, within Dshi_0077 at 76.381 kb on - strand, within Dshi_0077 at 76.439 kb on - strand, within Dshi_0077 at 76.484 kb on - strand, within Dshi_0077 at 76.551 kb on + strand, within Dshi_0077 at 76.819 kb on - strand, within Dshi_0077 at 77.047 kb on + strand, within Dshi_0078 at 77.057 kb on + strand, within Dshi_0078 at 77.155 kb on - strand, within Dshi_0078 at 77.196 kb on - strand, within Dshi_0078 at 77.219 kb on - strand, within Dshi_0078 at 77.294 kb on + strand, within Dshi_0078 at 77.341 kb on + strand, within Dshi_0078 at 77.478 kb on + strand, within Dshi_0078 at 77.483 kb on + strand at 77.483 kb on + strand at 77.483 kb on + strand at 77.483 kb on + strand at 77.491 kb on - strand at 77.491 kb on - strand at 77.498 kb on + strand at 77.602 kb on - strand at 77.633 kb on - strand at 77.655 kb on - strand at 77.655 kb on - strand at 77.655 kb on - strand at 77.683 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 75,102 + +0.5 75,119 + -1.6 75,191 - Dshi_0075 0.23 -0.4 75,246 + Dshi_0075 0.45 -0.2 75,246 + Dshi_0075 0.45 -1.6 75,259 - Dshi_0075 0.51 +1.0 75,278 - Dshi_0075 0.58 +0.6 75,293 - Dshi_0075 0.65 -0.1 75,333 - Dshi_0075 0.81 -1.0 75,411 - +0.1 75,418 - +0.6 75,421 - -0.4 75,451 + -0.3 75,459 - +0.6 75,502 - -0.9 75,508 + -0.6 75,508 + -0.9 75,508 + -1.0 75,508 + +2.6 75,553 + +0.3 75,575 + +3.4 75,583 - +1.8 75,685 - -1.4 75,807 + Dshi_0076 0.15 -1.4 75,832 + Dshi_0076 0.26 +0.2 75,837 + Dshi_0076 0.28 +1.0 75,840 - Dshi_0076 0.29 +0.2 75,845 - Dshi_0076 0.31 +0.1 75,894 - Dshi_0076 0.52 -2.0 75,965 - Dshi_0076 0.82 -0.8 76,123 + Dshi_0077 0.12 +0.3 76,381 - Dshi_0077 0.41 +0.5 76,439 - Dshi_0077 0.47 +2.2 76,484 - Dshi_0077 0.52 -4.1 76,551 + Dshi_0077 0.60 +2.5 76,819 - Dshi_0077 0.90 +1.4 77,047 + Dshi_0078 0.16 -0.4 77,057 + Dshi_0078 0.18 +1.6 77,155 - Dshi_0078 0.35 +0.1 77,196 - Dshi_0078 0.42 +0.2 77,219 - Dshi_0078 0.45 -1.1 77,294 + Dshi_0078 0.58 +1.1 77,341 + Dshi_0078 0.66 -2.1 77,478 + Dshi_0078 0.90 -4.6 77,483 + +0.4 77,483 + -1.2 77,483 + +1.6 77,483 + +0.6 77,491 - -0.4 77,491 - +1.1 77,498 + +0.8 77,602 - +0.6 77,633 - +1.8 77,655 - +0.4 77,655 - -1.8 77,655 - -0.0 77,683 + -0.1
Or see this region's nucleotide sequence