Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0054

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0053 and Dshi_0054 overlap by 22 nucleotidesDshi_0054 and Dshi_0055 are separated by 14 nucleotides Dshi_0053: Dshi_0053 - HI0933 family protein (RefSeq), at 49,943 to 51,163 _0053 Dshi_0054: Dshi_0054 - Glutathione S-transferase domain (RefSeq), at 51,142 to 51,732 _0054 Dshi_0055: Dshi_0055 - DNA polymerase III, delta (RefSeq), at 51,747 to 52,772 _0055 Position (kb) 51 52Strain fitness (log2 ratio) -2 -1 0 1at 50.149 kb on + strand, within Dshi_0053at 50.224 kb on - strand, within Dshi_0053at 50.224 kb on - strand, within Dshi_0053at 50.224 kb on - strand, within Dshi_0053at 50.496 kb on - strand, within Dshi_0053at 50.601 kb on - strand, within Dshi_0053at 50.611 kb on + strandat 50.677 kb on + strand, within Dshi_0053at 51.271 kb on - strand, within Dshi_0054at 51.321 kb on - strand, within Dshi_0054at 51.358 kb on - strand, within Dshi_0054at 51.369 kb on - strand, within Dshi_0054at 51.396 kb on + strand, within Dshi_0054at 51.419 kb on + strand, within Dshi_0054at 51.419 kb on + strand, within Dshi_0054at 51.421 kb on + strand, within Dshi_0054at 51.427 kb on - strand, within Dshi_0054at 51.429 kb on - strand, within Dshi_0054at 51.474 kb on - strand, within Dshi_0054at 51.488 kb on - strand, within Dshi_0054at 51.657 kb on + strand, within Dshi_0054at 51.707 kb on + strandat 51.709 kb on + strandat 51.717 kb on - strandat 51.726 kb on - strandat 51.736 kb on - strandat 51.738 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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50,149 + Dshi_0053 0.17 +0.6
50,224 - Dshi_0053 0.23 +1.2
50,224 - Dshi_0053 0.23 -2.6
50,224 - Dshi_0053 0.23 +1.2
50,496 - Dshi_0053 0.45 -0.4
50,601 - Dshi_0053 0.54 -1.8
50,611 + +0.6
50,677 + Dshi_0053 0.60 +0.2
51,271 - Dshi_0054 0.22 -2.6
51,321 - Dshi_0054 0.30 -0.4
51,358 - Dshi_0054 0.37 +0.1
51,369 - Dshi_0054 0.38 +0.6
51,396 + Dshi_0054 0.43 -2.2
51,419 + Dshi_0054 0.47 +0.2
51,419 + Dshi_0054 0.47 -2.0
51,421 + Dshi_0054 0.47 -2.6
51,427 - Dshi_0054 0.48 -1.0
51,429 - Dshi_0054 0.49 +0.6
51,474 - Dshi_0054 0.56 -1.8
51,488 - Dshi_0054 0.59 -2.7
51,657 + Dshi_0054 0.87 -1.2
51,707 + +0.6
51,709 + -1.2
51,717 - +0.6
51,726 - -1.4
51,736 - +0.8
51,738 + +0.6

Or see this region's nucleotide sequence