Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0048 and Dshi_0049 are separated by 101 nucleotides Dshi_0049 and Dshi_0050 overlap by 4 nucleotides Dshi_0050 and Dshi_0051 overlap by 4 nucleotides Dshi_0051 and Dshi_0052 are separated by 10 nucleotides Dshi_0052 and Dshi_0053 are separated by 74 nucleotides
Dshi_0048: Dshi_0048 - putative transposase (RefSeq), at 47,483 to 48,445
_0048
Dshi_0049: Dshi_0049 - hypothetical protein (RefSeq), at 48,547 to 48,753
_0049
Dshi_0050: Dshi_0050 - protein of unknown function DUF955 (RefSeq), at 48,750 to 49,232
_0050
Dshi_0051: Dshi_0051 - hypothetical protein (RefSeq), at 49,229 to 49,645
_0051
Dshi_0052: Dshi_0052 - hypothetical protein (RefSeq), at 49,656 to 49,868
_0052
Dshi_0053: Dshi_0053 - HI0933 family protein (RefSeq), at 49,943 to 51,163
_0053
Position (kb) 49
50 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3 at 48.324 kb on + strand, within Dshi_0048 at 48.374 kb on - strand at 48.400 kb on + strand at 48.402 kb on - strand at 48.501 kb on - strand at 48.621 kb on - strand, within Dshi_0049 at 48.708 kb on - strand, within Dshi_0049 at 49.292 kb on + strand, within Dshi_0051 at 49.292 kb on + strand, within Dshi_0051 at 49.297 kb on - strand, within Dshi_0051 at 49.338 kb on + strand, within Dshi_0051 at 49.385 kb on + strand, within Dshi_0051 at 49.397 kb on + strand, within Dshi_0051 at 49.405 kb on - strand, within Dshi_0051 at 49.410 kb on + strand, within Dshi_0051 at 49.410 kb on - strand, within Dshi_0051 at 49.423 kb on - strand, within Dshi_0051 at 49.492 kb on + strand, within Dshi_0051 at 49.500 kb on - strand, within Dshi_0051 at 49.507 kb on + strand, within Dshi_0051 at 49.507 kb on + strand, within Dshi_0051 at 49.513 kb on - strand, within Dshi_0051 at 49.513 kb on - strand, within Dshi_0051 at 49.513 kb on - strand, within Dshi_0051 at 49.513 kb on - strand, within Dshi_0051 at 49.521 kb on + strand, within Dshi_0051 at 49.522 kb on + strand, within Dshi_0051 at 49.552 kb on + strand, within Dshi_0051 at 49.552 kb on + strand, within Dshi_0051 at 49.640 kb on + strand at 49.648 kb on - strand at 49.648 kb on - strand at 49.648 kb on - strand at 49.648 kb on - strand at 49.648 kb on - strand at 49.652 kb on + strand at 49.652 kb on + strand at 49.660 kb on - strand at 49.660 kb on - strand at 49.660 kb on - strand at 49.660 kb on - strand at 49.660 kb on - strand at 49.660 kb on - strand at 49.660 kb on - strand at 49.703 kb on - strand, within Dshi_0052 at 49.731 kb on - strand, within Dshi_0052 at 49.775 kb on + strand, within Dshi_0052 at 49.783 kb on - strand, within Dshi_0052 at 49.796 kb on - strand, within Dshi_0052 at 49.798 kb on - strand, within Dshi_0052 at 49.884 kb on - strand at 49.987 kb on + strand at 49.995 kb on - strand at 50.022 kb on - strand at 50.122 kb on + strand, within Dshi_0053 at 50.149 kb on + strand, within Dshi_0053 at 50.224 kb on - strand, within Dshi_0053 at 50.224 kb on - strand, within Dshi_0053 at 50.224 kb on - strand, within Dshi_0053 at 50.496 kb on - strand, within Dshi_0053 at 50.601 kb on - strand, within Dshi_0053 at 50.611 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 48,324 + Dshi_0048 0.87 +0.9 48,374 - -1.4 48,400 + +0.6 48,402 - +0.5 48,501 - -1.5 48,621 - Dshi_0049 0.36 +0.6 48,708 - Dshi_0049 0.78 +0.3 49,292 + Dshi_0051 0.15 -1.8 49,292 + Dshi_0051 0.15 -4.1 49,297 - Dshi_0051 0.16 -0.8 49,338 + Dshi_0051 0.26 +0.6 49,385 + Dshi_0051 0.37 +0.6 49,397 + Dshi_0051 0.40 -0.6 49,405 - Dshi_0051 0.42 +3.4 49,410 + Dshi_0051 0.43 -1.0 49,410 - Dshi_0051 0.43 +0.0 49,423 - Dshi_0051 0.47 +0.6 49,492 + Dshi_0051 0.63 -0.4 49,500 - Dshi_0051 0.65 -0.9 49,507 + Dshi_0051 0.67 +2.9 49,507 + Dshi_0051 0.67 -1.9 49,513 - Dshi_0051 0.68 -0.9 49,513 - Dshi_0051 0.68 +1.1 49,513 - Dshi_0051 0.68 -1.2 49,513 - Dshi_0051 0.68 +1.6 49,521 + Dshi_0051 0.70 +0.6 49,522 + Dshi_0051 0.70 -2.2 49,552 + Dshi_0051 0.77 +0.6 49,552 + Dshi_0051 0.77 +0.6 49,640 + +1.2 49,648 - +0.3 49,648 - -0.0 49,648 - -0.1 49,648 - +0.2 49,648 - +0.7 49,652 + +1.6 49,652 + -1.4 49,660 - -2.2 49,660 - -1.4 49,660 - +0.6 49,660 - -0.4 49,660 - +1.4 49,660 - -2.1 49,660 - -0.9 49,703 - Dshi_0052 0.22 -0.6 49,731 - Dshi_0052 0.35 -0.0 49,775 + Dshi_0052 0.56 -0.6 49,783 - Dshi_0052 0.60 -1.3 49,796 - Dshi_0052 0.66 -1.8 49,798 - Dshi_0052 0.67 -1.1 49,884 - -0.3 49,987 + -2.8 49,995 - +0.6 50,022 - +1.6 50,122 + Dshi_0053 0.15 -0.2 50,149 + Dshi_0053 0.17 +0.6 50,224 - Dshi_0053 0.23 +1.2 50,224 - Dshi_0053 0.23 -2.6 50,224 - Dshi_0053 0.23 +1.2 50,496 - Dshi_0053 0.45 -0.4 50,601 - Dshi_0053 0.54 -1.8 50,611 + +0.6
Or see this region's nucleotide sequence