Strain Fitness in Dinoroseobacter shibae DFL-12 around Dshi_0045

Experiment: m.b. A22 0.02 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDshi_0043 and Dshi_0044 are separated by 300 nucleotidesDshi_0044 and Dshi_0045 are separated by 6 nucleotidesDshi_0045 and Dshi_0046 are separated by 300 nucleotidesDshi_0046 and Dshi_0047 are separated by 279 nucleotides Dshi_0043: Dshi_0043 - hypothetical protein (RefSeq), at 43,903 to 44,862 _0043 Dshi_0044: Dshi_0044 - hypothetical protein (RefSeq), at 45,163 to 45,633 _0044 Dshi_0045: Dshi_0045 - UspA domain protein (RefSeq), at 45,640 to 46,014 _0045 Dshi_0046: Dshi_0046 - hypothetical protein (RefSeq), at 46,315 to 46,704 _0046 Dshi_0047: Dshi_0047 - hypothetical protein (RefSeq), at 46,984 to 47,406 _0047 Position (kb) 45 46 47Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 45.114 kb on + strandat 45.122 kb on - strandat 45.156 kb on - strandat 45.156 kb on - strandat 45.199 kb on - strandat 45.204 kb on - strandat 45.235 kb on - strand, within Dshi_0044at 45.235 kb on - strand, within Dshi_0044at 45.333 kb on - strand, within Dshi_0044at 45.360 kb on - strand, within Dshi_0044at 45.430 kb on - strand, within Dshi_0044at 45.444 kb on - strand, within Dshi_0044at 45.451 kb on + strand, within Dshi_0044at 45.473 kb on - strand, within Dshi_0044at 45.495 kb on - strand, within Dshi_0044at 45.540 kb on + strand, within Dshi_0044at 45.540 kb on + strand, within Dshi_0044at 45.673 kb on + strandat 45.683 kb on + strand, within Dshi_0045at 45.691 kb on - strand, within Dshi_0045at 45.712 kb on + strand, within Dshi_0045at 45.760 kb on - strand, within Dshi_0045at 45.783 kb on - strand, within Dshi_0045at 45.881 kb on + strand, within Dshi_0045at 45.886 kb on + strand, within Dshi_0045at 45.971 kb on - strand, within Dshi_0045at 46.018 kb on - strandat 46.050 kb on - strandat 46.139 kb on - strandat 46.146 kb on + strandat 46.150 kb on - strandat 46.172 kb on - strandat 46.220 kb on + strandat 46.290 kb on - strandat 46.325 kb on + strandat 46.348 kb on - strandat 46.427 kb on + strand, within Dshi_0046at 46.427 kb on - strand, within Dshi_0046at 46.453 kb on - strand, within Dshi_0046at 46.460 kb on + strand, within Dshi_0046at 46.468 kb on - strand, within Dshi_0046at 46.512 kb on - strand, within Dshi_0046at 46.512 kb on - strand, within Dshi_0046at 46.550 kb on - strand, within Dshi_0046at 46.596 kb on + strand, within Dshi_0046at 46.596 kb on + strand, within Dshi_0046at 46.596 kb on + strand, within Dshi_0046at 46.596 kb on + strand, within Dshi_0046at 46.604 kb on - strand, within Dshi_0046at 46.604 kb on - strand, within Dshi_0046at 46.604 kb on - strand, within Dshi_0046at 46.604 kb on - strand, within Dshi_0046at 46.609 kb on + strand, within Dshi_0046at 46.617 kb on - strand, within Dshi_0046at 46.617 kb on - strand, within Dshi_0046at 46.641 kb on + strand, within Dshi_0046at 46.641 kb on + strand, within Dshi_0046at 46.649 kb on - strand, within Dshi_0046at 46.673 kb on - strandat 46.673 kb on - strandat 46.683 kb on - strandat 46.699 kb on + strandat 46.699 kb on + strandat 46.714 kb on - strandat 46.846 kb on - strandat 46.879 kb on + strandat 46.887 kb on - strandat 46.887 kb on - strandat 46.887 kb on - strandat 46.893 kb on - strandat 46.901 kb on + strandat 46.924 kb on - strandat 46.952 kb on + strandat 46.969 kb on + strandat 46.970 kb on - strandat 46.980 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml
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45,114 + -2.0
45,122 - -2.5
45,156 - -0.8
45,156 - -2.2
45,199 - -1.4
45,204 - +0.6
45,235 - Dshi_0044 0.15 -1.4
45,235 - Dshi_0044 0.15 -1.5
45,333 - Dshi_0044 0.36 +1.6
45,360 - Dshi_0044 0.42 +0.6
45,430 - Dshi_0044 0.57 -1.5
45,444 - Dshi_0044 0.60 +0.6
45,451 + Dshi_0044 0.61 +3.4
45,473 - Dshi_0044 0.66 -1.1
45,495 - Dshi_0044 0.70 -1.9
45,540 + Dshi_0044 0.80 +0.4
45,540 + Dshi_0044 0.80 -3.8
45,673 + -0.6
45,683 + Dshi_0045 0.11 -1.4
45,691 - Dshi_0045 0.14 -1.7
45,712 + Dshi_0045 0.19 -1.0
45,760 - Dshi_0045 0.32 -0.2
45,783 - Dshi_0045 0.38 +0.6
45,881 + Dshi_0045 0.64 -0.1
45,886 + Dshi_0045 0.66 +0.6
45,971 - Dshi_0045 0.88 -1.8
46,018 - -0.4
46,050 - -0.5
46,139 - -0.2
46,146 + -4.1
46,150 - +0.9
46,172 - -0.4
46,220 + +2.6
46,290 - -0.3
46,325 + -0.5
46,348 - -0.8
46,427 + Dshi_0046 0.29 -0.5
46,427 - Dshi_0046 0.29 -0.5
46,453 - Dshi_0046 0.35 -1.8
46,460 + Dshi_0046 0.37 -1.4
46,468 - Dshi_0046 0.39 +1.0
46,512 - Dshi_0046 0.51 -0.4
46,512 - Dshi_0046 0.51 -0.7
46,550 - Dshi_0046 0.60 -2.6
46,596 + Dshi_0046 0.72 -1.7
46,596 + Dshi_0046 0.72 -1.0
46,596 + Dshi_0046 0.72 -2.8
46,596 + Dshi_0046 0.72 +1.2
46,604 - Dshi_0046 0.74 -0.3
46,604 - Dshi_0046 0.74 -2.0
46,604 - Dshi_0046 0.74 -0.1
46,604 - Dshi_0046 0.74 -0.2
46,609 + Dshi_0046 0.75 -1.0
46,617 - Dshi_0046 0.77 +1.6
46,617 - Dshi_0046 0.77 -0.1
46,641 + Dshi_0046 0.84 -0.8
46,641 + Dshi_0046 0.84 +2.9
46,649 - Dshi_0046 0.86 +1.6
46,673 - -0.9
46,673 - +0.9
46,683 - -2.6
46,699 + -1.6
46,699 + -0.9
46,714 - -1.9
46,846 - -0.4
46,879 + -0.8
46,887 - +0.4
46,887 - -0.9
46,887 - -0.3
46,893 - -2.6
46,901 + +0.2
46,924 - -0.4
46,952 + -1.0
46,969 + -1.6
46,970 - +1.9
46,980 + -1.3

Or see this region's nucleotide sequence