Experiment: m.b. A22 0.02 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dshi_0025 and Dshi_0026 are separated by 73 nucleotides Dshi_0026 and Dshi_0027 are separated by 123 nucleotides
Dshi_0025: Dshi_0025 - anti-ECFsigma factor, ChrR (RefSeq), at 29,143 to 29,814
_0025
Dshi_0026: Dshi_0026 - NAD-dependent epimerase/dehydratase (RefSeq), at 29,888 to 30,529
_0026
Dshi_0027: Dshi_0027 - Alkane 1-monooxygenase (RefSeq), at 30,653 to 31,807
_0027
Position (kb) 29
30
31 Strain fitness (log2 ratio) -4
-3
-2
-1
0
1
2
3
4 at 28.889 kb on + strand at 28.945 kb on - strand at 28.964 kb on - strand at 29.006 kb on + strand at 29.006 kb on + strand at 29.190 kb on + strand at 29.191 kb on + strand at 29.198 kb on - strand at 29.337 kb on - strand, within Dshi_0025 at 29.390 kb on + strand, within Dshi_0025 at 29.398 kb on - strand, within Dshi_0025 at 29.434 kb on + strand, within Dshi_0025 at 29.436 kb on - strand, within Dshi_0025 at 29.463 kb on - strand, within Dshi_0025 at 29.469 kb on + strand, within Dshi_0025 at 29.575 kb on + strand, within Dshi_0025 at 29.586 kb on + strand, within Dshi_0025 at 29.667 kb on + strand, within Dshi_0025 at 29.723 kb on + strand, within Dshi_0025 at 29.731 kb on - strand at 29.821 kb on - strand at 29.822 kb on - strand at 29.838 kb on - strand at 29.996 kb on + strand, within Dshi_0026 at 30.039 kb on - strand, within Dshi_0026 at 30.258 kb on - strand, within Dshi_0026 at 30.314 kb on + strand, within Dshi_0026 at 30.337 kb on - strand, within Dshi_0026 at 30.341 kb on + strand, within Dshi_0026 at 30.341 kb on + strand, within Dshi_0026 at 30.351 kb on + strand, within Dshi_0026 at 30.395 kb on + strand, within Dshi_0026 at 30.403 kb on - strand, within Dshi_0026 at 30.419 kb on + strand, within Dshi_0026 at 30.703 kb on - strand at 30.756 kb on + strand at 30.780 kb on + strand, within Dshi_0027 at 30.811 kb on + strand, within Dshi_0027 at 30.821 kb on + strand, within Dshi_0027 at 30.836 kb on + strand, within Dshi_0027 at 30.837 kb on + strand, within Dshi_0027 at 30.857 kb on - strand, within Dshi_0027 at 30.920 kb on + strand, within Dshi_0027 at 30.982 kb on - strand, within Dshi_0027 at 30.982 kb on - strand, within Dshi_0027 at 31.019 kb on - strand, within Dshi_0027 at 31.102 kb on - strand, within Dshi_0027 at 31.145 kb on + strand, within Dshi_0027 at 31.192 kb on + strand, within Dshi_0027 at 31.197 kb on + strand, within Dshi_0027 at 31.234 kb on + strand, within Dshi_0027 at 31.308 kb on + strand, within Dshi_0027 at 31.335 kb on + strand, within Dshi_0027 at 31.343 kb on - strand, within Dshi_0027 at 31.350 kb on + strand, within Dshi_0027 at 31.377 kb on - strand, within Dshi_0027
Per-strain Table
Position Strand Gene LocusTag Fraction m.b. A22 0.02 mg/ml remove 28,889 + +0.2 28,945 - +2.2 28,964 - -0.9 29,006 + +1.6 29,006 + +0.6 29,190 + -1.3 29,191 + -2.0 29,198 - -1.3 29,337 - Dshi_0025 0.29 -0.4 29,390 + Dshi_0025 0.37 -4.2 29,398 - Dshi_0025 0.38 -0.6 29,434 + Dshi_0025 0.43 -1.4 29,436 - Dshi_0025 0.44 +3.7 29,463 - Dshi_0025 0.48 +3.9 29,469 + Dshi_0025 0.49 -1.0 29,575 + Dshi_0025 0.64 -0.0 29,586 + Dshi_0025 0.66 -1.4 29,667 + Dshi_0025 0.78 +1.0 29,723 + Dshi_0025 0.86 -2.2 29,731 - -0.4 29,821 - -0.1 29,822 - +0.6 29,838 - -0.4 29,996 + Dshi_0026 0.17 -2.2 30,039 - Dshi_0026 0.24 +0.6 30,258 - Dshi_0026 0.58 -1.4 30,314 + Dshi_0026 0.66 +2.6 30,337 - Dshi_0026 0.70 +0.8 30,341 + Dshi_0026 0.71 -1.3 30,341 + Dshi_0026 0.71 -2.2 30,351 + Dshi_0026 0.72 -1.0 30,395 + Dshi_0026 0.79 -0.1 30,403 - Dshi_0026 0.80 -1.2 30,419 + Dshi_0026 0.83 -3.7 30,703 - -0.8 30,756 + +0.6 30,780 + Dshi_0027 0.11 +0.1 30,811 + Dshi_0027 0.14 -0.8 30,821 + Dshi_0027 0.15 +1.0 30,836 + Dshi_0027 0.16 -3.7 30,837 + Dshi_0027 0.16 -0.0 30,857 - Dshi_0027 0.18 -1.5 30,920 + Dshi_0027 0.23 +2.2 30,982 - Dshi_0027 0.28 +1.2 30,982 - Dshi_0027 0.28 -0.6 31,019 - Dshi_0027 0.32 +0.6 31,102 - Dshi_0027 0.39 -0.2 31,145 + Dshi_0027 0.43 -1.0 31,192 + Dshi_0027 0.47 +1.6 31,197 + Dshi_0027 0.47 -1.0 31,234 + Dshi_0027 0.50 +2.9 31,308 + Dshi_0027 0.57 -1.0 31,335 + Dshi_0027 0.59 +0.1 31,343 - Dshi_0027 0.60 +2.6 31,350 + Dshi_0027 0.60 -1.8 31,377 - Dshi_0027 0.63 -0.8
Or see this region's nucleotide sequence