Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2943

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntpanC and DvMF_2943 are separated by 313 nucleotidesDvMF_2943 and DvMF_2944 are separated by 153 nucleotides DvMF_2942: panC - pantoate--beta-alanine ligase (RefSeq), at 3,713,801 to 3,714,652 panC DvMF_2943: DvMF_2943 - hypothetical protein (RefSeq), at 3,714,966 to 3,715,706 _2943 DvMF_2944: DvMF_2944 - hypothetical protein (RefSeq), at 3,715,860 to 3,716,942 _2944 Position (kb) 3714 3715 3716Strain fitness (log2 ratio) -2 -1 0 1at 3715.009 kb on + strandat 3715.014 kb on + strandat 3715.226 kb on - strand, within DvMF_2943at 3715.258 kb on - strand, within DvMF_2943at 3715.260 kb on + strand, within DvMF_2943at 3715.268 kb on - strand, within DvMF_2943at 3715.268 kb on - strand, within DvMF_2943at 3715.853 kb on + strandat 3715.914 kb on - strandat 3715.945 kb on + strandat 3715.960 kb on + strandat 3715.974 kb on + strand, within DvMF_2944at 3716.300 kb on + strand, within DvMF_2944at 3716.528 kb on + strand, within DvMF_2944at 3716.617 kb on + strand, within DvMF_2944at 3716.618 kb on + strand, within DvMF_2944at 3716.618 kb on + strand, within DvMF_2944at 3716.675 kb on + strand, within DvMF_2944

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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3,715,009 + -1.2
3,715,014 + +0.1
3,715,226 - DvMF_2943 0.35 -0.4
3,715,258 - DvMF_2943 0.39 -0.8
3,715,260 + DvMF_2943 0.40 -0.0
3,715,268 - DvMF_2943 0.41 -1.0
3,715,268 - DvMF_2943 0.41 -1.8
3,715,853 + +0.2
3,715,914 - -0.7
3,715,945 + -0.3
3,715,960 + -0.6
3,715,974 + DvMF_2944 0.11 -0.2
3,716,300 + DvMF_2944 0.41 -0.4
3,716,528 + DvMF_2944 0.62 -0.1
3,716,617 + DvMF_2944 0.70 -0.5
3,716,618 + DvMF_2944 0.70 -0.3
3,716,618 + DvMF_2944 0.70 -0.0
3,716,675 + DvMF_2944 0.75 +0.4

Or see this region's nucleotide sequence