Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2942

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2941 and panC are separated by 134 nucleotidespanC and DvMF_2943 are separated by 313 nucleotides DvMF_2941: DvMF_2941 - S-adenosylmethionine synthetase (RefSeq), at 3,712,497 to 3,713,666 _2941 DvMF_2942: panC - pantoate--beta-alanine ligase (RefSeq), at 3,713,801 to 3,714,652 panC DvMF_2943: DvMF_2943 - hypothetical protein (RefSeq), at 3,714,966 to 3,715,706 _2943 Position (kb) 3713 3714 3715Strain fitness (log2 ratio) -2 -1 0 1at 3713.730 kb on - strandat 3713.775 kb on + strandat 3715.009 kb on + strandat 3715.014 kb on + strandat 3715.226 kb on - strand, within DvMF_2943at 3715.258 kb on - strand, within DvMF_2943at 3715.260 kb on + strand, within DvMF_2943at 3715.268 kb on - strand, within DvMF_2943at 3715.268 kb on - strand, within DvMF_2943

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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3,713,730 - -1.2
3,713,775 + -0.0
3,715,009 + -1.2
3,715,014 + +0.1
3,715,226 - DvMF_2943 0.35 -0.4
3,715,258 - DvMF_2943 0.39 -0.8
3,715,260 + DvMF_2943 0.40 -0.0
3,715,268 - DvMF_2943 0.41 -1.0
3,715,268 - DvMF_2943 0.41 -1.8

Or see this region's nucleotide sequence