Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_2780

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2779 and DvMF_2780 are separated by 504 nucleotidesDvMF_2780 and DvMF_2781 are separated by 208 nucleotidesDvMF_2781 and DvMF_2782 overlap by 4 nucleotides DvMF_2779: DvMF_2779 - PAS modulated sigma54 specific transcriptional regulator, Fis family (RefSeq), at 3,515,359 to 3,517,572 _2779 DvMF_2780: DvMF_2780 - ABC transporter, periplasmic substrate-binding protein (RefSeq), at 3,518,077 to 3,518,898 _2780 DvMF_2781: DvMF_2781 - binding-protein-dependent transport systems inner membrane component (RefSeq), at 3,519,107 to 3,519,802 _2781 DvMF_2782: DvMF_2782 - ABC transporter related (RefSeq), at 3,519,799 to 3,520,653 _2782 Position (kb) 3518 3519Strain fitness (log2 ratio) -1 0 1at 3517.172 kb on - strand, within DvMF_2779at 3517.825 kb on + strandat 3517.923 kb on + strandat 3518.130 kb on + strandat 3518.438 kb on - strand, within DvMF_2780at 3518.559 kb on - strand, within DvMF_2780at 3518.616 kb on - strand, within DvMF_2780at 3518.633 kb on + strand, within DvMF_2780at 3518.739 kb on + strand, within DvMF_2780at 3519.192 kb on + strand, within DvMF_2781at 3519.219 kb on - strand, within DvMF_2781at 3519.392 kb on - strand, within DvMF_2781at 3519.498 kb on + strand, within DvMF_2781at 3519.710 kb on + strand, within DvMF_2781at 3519.813 kb on + strandat 3519.826 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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3,517,172 - DvMF_2779 0.82 +0.2
3,517,825 + -0.2
3,517,923 + +0.4
3,518,130 + -0.4
3,518,438 - DvMF_2780 0.44 -0.3
3,518,559 - DvMF_2780 0.59 +0.7
3,518,616 - DvMF_2780 0.66 -0.2
3,518,633 + DvMF_2780 0.68 -0.3
3,518,739 + DvMF_2780 0.81 -0.1
3,519,192 + DvMF_2781 0.12 -0.6
3,519,219 - DvMF_2781 0.16 -0.3
3,519,392 - DvMF_2781 0.41 +0.0
3,519,498 + DvMF_2781 0.56 -0.1
3,519,710 + DvMF_2781 0.87 -0.2
3,519,813 + -0.4
3,519,826 + -0.3

Or see this region's nucleotide sequence