Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_R0071

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_2636 and DvMF_R0071 are separated by 741 nucleotidesDvMF_R0071 and DvMF_2637 are separated by 545 nucleotides DvMF_2636: DvMF_2636 - hypothetical protein (RefSeq), at 3,331,467 to 3,332,336 _2636 DvMF_R0071: DvMF_R0071 - tRNA-Glu (RefSeq), at 3,333,078 to 3,333,154 _R0071 DvMF_2637: DvMF_2637 - diguanylate cyclase with extracellular sensor (RefSeq), at 3,333,700 to 3,335,124 _2637 Position (kb) 3333 3334Strain fitness (log2 ratio) -1 0 1at 3332.578 kb on - strandat 3332.698 kb on + strandat 3332.698 kb on + strandat 3332.706 kb on - strandat 3332.924 kb on + strandat 3333.235 kb on + strandat 3333.255 kb on - strandat 3333.304 kb on + strandat 3333.354 kb on + strandat 3333.362 kb on - strandat 3333.504 kb on - strandat 3333.831 kb on - strandat 3333.898 kb on + strand, within DvMF_2637

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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3,332,578 - -0.3
3,332,698 + -0.2
3,332,698 + -0.3
3,332,706 - -0.3
3,332,924 + -0.5
3,333,235 + -0.1
3,333,255 - -0.5
3,333,304 + -0.6
3,333,354 + -0.9
3,333,362 - -0.1
3,333,504 - +0.1
3,333,831 - -0.3
3,333,898 + DvMF_2637 0.14 +1.1

Or see this region's nucleotide sequence