Experiment: MoYLS4 with G418 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1850 and DvMF_1851 overlap by 4 nucleotides DvMF_1851 and DvMF_1852 are separated by 274 nucleotides DvMF_1852 and DvMF_1853 are separated by 191 nucleotides
DvMF_1850: DvMF_1850 - Capsule polysaccharide biosynthesis protein (RefSeq), at 2,262,005 to 2,263,510
_1850
DvMF_1851: DvMF_1851 - Methyltransferase type 11 (RefSeq), at 2,263,507 to 2,264,217
_1851
DvMF_1852: DvMF_1852 - glycosyl transferase family 2 (RefSeq), at 2,264,492 to 2,266,969
_1852
DvMF_1853: DvMF_1853 - glycosyl transferase group 1 (RefSeq), at 2,267,161 to 2,268,318
_1853
Position (kb)
2264
2265
2266
2267 Strain fitness (log2 ratio)
-2
-1
0
1 at 2263.843 kb on + strand, within DvMF_1851 at 2263.921 kb on + strand, within DvMF_1851 at 2264.091 kb on + strand, within DvMF_1851 at 2264.158 kb on + strand at 2264.163 kb on + strand at 2264.428 kb on + strand at 2264.448 kb on + strand at 2264.477 kb on - strand at 2264.511 kb on - strand at 2264.570 kb on + strand at 2264.743 kb on + strand, within DvMF_1852 at 2264.743 kb on + strand, within DvMF_1852 at 2264.743 kb on + strand, within DvMF_1852 at 2264.826 kb on - strand, within DvMF_1852 at 2264.994 kb on - strand, within DvMF_1852 at 2265.123 kb on - strand, within DvMF_1852 at 2265.228 kb on + strand, within DvMF_1852 at 2265.236 kb on - strand, within DvMF_1852 at 2265.236 kb on - strand, within DvMF_1852 at 2265.309 kb on + strand, within DvMF_1852 at 2265.710 kb on + strand, within DvMF_1852 at 2265.715 kb on + strand, within DvMF_1852 at 2265.718 kb on - strand, within DvMF_1852 at 2265.856 kb on + strand, within DvMF_1852 at 2265.888 kb on - strand, within DvMF_1852 at 2265.962 kb on - strand, within DvMF_1852 at 2265.962 kb on - strand, within DvMF_1852 at 2266.189 kb on + strand, within DvMF_1852 at 2266.311 kb on + strand, within DvMF_1852 at 2266.316 kb on + strand, within DvMF_1852 at 2266.424 kb on - strand, within DvMF_1852 at 2266.574 kb on + strand, within DvMF_1852 at 2266.598 kb on + strand, within DvMF_1852 at 2266.627 kb on + strand, within DvMF_1852 at 2266.689 kb on - strand, within DvMF_1852 at 2266.854 kb on - strand at 2266.928 kb on + strand at 2266.972 kb on + strand at 2267.082 kb on - strand at 2267.128 kb on - strand at 2267.317 kb on + strand, within DvMF_1853 at 2267.446 kb on - strand, within DvMF_1853 at 2267.679 kb on - strand, within DvMF_1853 at 2267.842 kb on - strand, within DvMF_1853 at 2267.916 kb on + strand, within DvMF_1853 at 2267.937 kb on - strand, within DvMF_1853
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml remove 2,263,843 + DvMF_1851 0.47 -0.5 2,263,921 + DvMF_1851 0.58 -1.8 2,264,091 + DvMF_1851 0.82 -0.9 2,264,158 + -0.6 2,264,163 + -0.3 2,264,428 + -0.6 2,264,448 + +0.2 2,264,477 - -1.0 2,264,511 - -0.4 2,264,570 + -1.7 2,264,743 + DvMF_1852 0.10 -0.2 2,264,743 + DvMF_1852 0.10 -0.7 2,264,743 + DvMF_1852 0.10 -0.1 2,264,826 - DvMF_1852 0.13 -0.3 2,264,994 - DvMF_1852 0.20 -1.1 2,265,123 - DvMF_1852 0.25 -0.2 2,265,228 + DvMF_1852 0.30 -0.1 2,265,236 - DvMF_1852 0.30 -0.4 2,265,236 - DvMF_1852 0.30 -0.6 2,265,309 + DvMF_1852 0.33 -0.2 2,265,710 + DvMF_1852 0.49 -0.5 2,265,715 + DvMF_1852 0.49 +0.2 2,265,718 - DvMF_1852 0.49 -0.3 2,265,856 + DvMF_1852 0.55 -0.7 2,265,888 - DvMF_1852 0.56 -0.3 2,265,962 - DvMF_1852 0.59 -0.5 2,265,962 - DvMF_1852 0.59 -0.3 2,266,189 + DvMF_1852 0.68 -0.1 2,266,311 + DvMF_1852 0.73 -0.4 2,266,316 + DvMF_1852 0.74 +0.1 2,266,424 - DvMF_1852 0.78 -0.5 2,266,574 + DvMF_1852 0.84 -0.5 2,266,598 + DvMF_1852 0.85 -0.2 2,266,627 + DvMF_1852 0.86 -0.6 2,266,689 - DvMF_1852 0.89 -0.9 2,266,854 - -0.1 2,266,928 + -1.1 2,266,972 + -0.7 2,267,082 - -0.7 2,267,128 - -0.6 2,267,317 + DvMF_1853 0.13 -0.0 2,267,446 - DvMF_1853 0.25 -0.3 2,267,679 - DvMF_1853 0.45 +0.2 2,267,842 - DvMF_1853 0.59 -0.5 2,267,916 + DvMF_1853 0.65 -0.4 2,267,937 - DvMF_1853 0.67 -0.3
Or see this region's nucleotide sequence