Experiment: MoYLS4 with G418 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_1503 and DvMF_1504 are separated by 1 nucleotides DvMF_1504 and DvMF_1505 are separated by 1 nucleotides DvMF_1505 and DvMF_1506 are separated by 431 nucleotides DvMF_1506 and DvMF_1507 are separated by 228 nucleotides
DvMF_1503: DvMF_1503 - Mammalian cell entry related domain protein (RefSeq), at 1,855,333 to 1,856,256
_1503
DvMF_1504: DvMF_1504 - ABC transporter related (RefSeq), at 1,856,258 to 1,857,109
_1504
DvMF_1505: DvMF_1505 - protein of unknown function DUF140 (RefSeq), at 1,857,111 to 1,858,403
_1505
DvMF_1506: DvMF_1506 - hypothetical protein (RefSeq), at 1,858,835 to 1,859,107
_1506
DvMF_1507: DvMF_1507 - Extradiol ring-cleavage dioxygenase class III protein subunit B (RefSeq), at 1,859,336 to 1,860,139
_1507
Position (kb)
1857
1858
1859 Strain fitness (log2 ratio)
-2
-1
0
1 at 1856.317 kb on + strand at 1856.325 kb on - strand at 1856.353 kb on - strand, within DvMF_1504 at 1856.521 kb on + strand, within DvMF_1504 at 1856.653 kb on - strand, within DvMF_1504 at 1856.740 kb on + strand, within DvMF_1504 at 1856.955 kb on - strand, within DvMF_1504 at 1857.245 kb on - strand, within DvMF_1505 at 1857.628 kb on - strand, within DvMF_1505 at 1857.749 kb on + strand, within DvMF_1505 at 1857.852 kb on + strand, within DvMF_1505 at 1857.889 kb on - strand, within DvMF_1505 at 1858.124 kb on - strand, within DvMF_1505 at 1858.212 kb on + strand, within DvMF_1505 at 1858.433 kb on + strand at 1858.553 kb on + strand at 1858.689 kb on + strand at 1858.754 kb on + strand at 1858.942 kb on + strand, within DvMF_1506 at 1858.953 kb on + strand, within DvMF_1506 at 1859.056 kb on - strand, within DvMF_1506 at 1859.081 kb on + strand at 1859.091 kb on + strand at 1859.161 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml remove 1,856,317 + -0.3 1,856,325 - -0.3 1,856,353 - DvMF_1504 0.11 -0.3 1,856,521 + DvMF_1504 0.31 -1.0 1,856,653 - DvMF_1504 0.46 -1.4 1,856,740 + DvMF_1504 0.57 -0.7 1,856,955 - DvMF_1504 0.82 -0.7 1,857,245 - DvMF_1505 0.10 -1.1 1,857,628 - DvMF_1505 0.40 -1.9 1,857,749 + DvMF_1505 0.49 -0.5 1,857,852 + DvMF_1505 0.57 -0.6 1,857,889 - DvMF_1505 0.60 -0.5 1,858,124 - DvMF_1505 0.78 +0.3 1,858,212 + DvMF_1505 0.85 -0.5 1,858,433 + -0.2 1,858,553 + -0.1 1,858,689 + -0.4 1,858,754 + -0.2 1,858,942 + DvMF_1506 0.39 -1.3 1,858,953 + DvMF_1506 0.43 -0.4 1,859,056 - DvMF_1506 0.81 -0.1 1,859,081 + -1.6 1,859,091 + -0.1 1,859,161 + -0.5
Or see this region's nucleotide sequence