Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_1505

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_1503 and DvMF_1504 are separated by 1 nucleotidesDvMF_1504 and DvMF_1505 are separated by 1 nucleotidesDvMF_1505 and DvMF_1506 are separated by 431 nucleotidesDvMF_1506 and DvMF_1507 are separated by 228 nucleotides DvMF_1503: DvMF_1503 - Mammalian cell entry related domain protein (RefSeq), at 1,855,333 to 1,856,256 _1503 DvMF_1504: DvMF_1504 - ABC transporter related (RefSeq), at 1,856,258 to 1,857,109 _1504 DvMF_1505: DvMF_1505 - protein of unknown function DUF140 (RefSeq), at 1,857,111 to 1,858,403 _1505 DvMF_1506: DvMF_1506 - hypothetical protein (RefSeq), at 1,858,835 to 1,859,107 _1506 DvMF_1507: DvMF_1507 - Extradiol ring-cleavage dioxygenase class III protein subunit B (RefSeq), at 1,859,336 to 1,860,139 _1507 Position (kb) 1857 1858 1859Strain fitness (log2 ratio) -2 -1 0 1at 1856.317 kb on + strandat 1856.325 kb on - strandat 1856.353 kb on - strand, within DvMF_1504at 1856.521 kb on + strand, within DvMF_1504at 1856.653 kb on - strand, within DvMF_1504at 1856.740 kb on + strand, within DvMF_1504at 1856.955 kb on - strand, within DvMF_1504at 1857.245 kb on - strand, within DvMF_1505at 1857.628 kb on - strand, within DvMF_1505at 1857.749 kb on + strand, within DvMF_1505at 1857.852 kb on + strand, within DvMF_1505at 1857.889 kb on - strand, within DvMF_1505at 1858.124 kb on - strand, within DvMF_1505at 1858.212 kb on + strand, within DvMF_1505at 1858.433 kb on + strandat 1858.553 kb on + strandat 1858.689 kb on + strandat 1858.754 kb on + strandat 1858.942 kb on + strand, within DvMF_1506at 1858.953 kb on + strand, within DvMF_1506at 1859.056 kb on - strand, within DvMF_1506at 1859.081 kb on + strandat 1859.091 kb on + strandat 1859.161 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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1,856,317 + -0.3
1,856,325 - -0.3
1,856,353 - DvMF_1504 0.11 -0.3
1,856,521 + DvMF_1504 0.31 -1.0
1,856,653 - DvMF_1504 0.46 -1.4
1,856,740 + DvMF_1504 0.57 -0.7
1,856,955 - DvMF_1504 0.82 -0.7
1,857,245 - DvMF_1505 0.10 -1.1
1,857,628 - DvMF_1505 0.40 -1.9
1,857,749 + DvMF_1505 0.49 -0.5
1,857,852 + DvMF_1505 0.57 -0.6
1,857,889 - DvMF_1505 0.60 -0.5
1,858,124 - DvMF_1505 0.78 +0.3
1,858,212 + DvMF_1505 0.85 -0.5
1,858,433 + -0.2
1,858,553 + -0.1
1,858,689 + -0.4
1,858,754 + -0.2
1,858,942 + DvMF_1506 0.39 -1.3
1,858,953 + DvMF_1506 0.43 -0.4
1,859,056 - DvMF_1506 0.81 -0.1
1,859,081 + -1.6
1,859,091 + -0.1
1,859,161 + -0.5

Or see this region's nucleotide sequence