Experiment: MoYLS4 with G418 0.125 mg/ml
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DvMF_0341 and DvMF_0342 are separated by 359 nucleotides DvMF_0342 and DvMF_0343 are separated by 569 nucleotides
DvMF_0341: DvMF_0341 - glycine cleavage system T protein (RefSeq), at 398,287 to 399,375
_0341
DvMF_0342: DvMF_0342 - hypothetical protein (RefSeq), at 399,735 to 401,453
_0342
DvMF_0343: DvMF_0343 - putative GAF sensor protein (RefSeq), at 402,023 to 403,123
_0343
Position (kb) 399
400
401
402 Strain fitness (log2 ratio) -2
-1
0
1 at 398.844 kb on - strand, within DvMF_0341 at 398.871 kb on + strand, within DvMF_0341 at 398.916 kb on + strand, within DvMF_0341 at 398.924 kb on - strand, within DvMF_0341 at 398.924 kb on - strand, within DvMF_0341 at 398.976 kb on - strand, within DvMF_0341 at 399.015 kb on - strand, within DvMF_0341 at 399.072 kb on - strand, within DvMF_0341 at 399.105 kb on + strand, within DvMF_0341 at 399.133 kb on + strand, within DvMF_0341 at 399.166 kb on + strand, within DvMF_0341 at 399.174 kb on - strand, within DvMF_0341 at 399.290 kb on + strand at 399.332 kb on + strand at 399.340 kb on - strand at 399.619 kb on + strand at 399.766 kb on + strand at 399.872 kb on + strand at 400.037 kb on + strand, within DvMF_0342 at 400.037 kb on + strand, within DvMF_0342 at 400.037 kb on + strand, within DvMF_0342 at 400.045 kb on - strand, within DvMF_0342 at 400.045 kb on - strand, within DvMF_0342 at 400.440 kb on + strand, within DvMF_0342 at 400.459 kb on + strand, within DvMF_0342 at 400.550 kb on + strand, within DvMF_0342 at 400.586 kb on - strand, within DvMF_0342 at 400.680 kb on + strand, within DvMF_0342 at 400.718 kb on + strand, within DvMF_0342 at 400.918 kb on - strand, within DvMF_0342 at 401.038 kb on + strand, within DvMF_0342 at 401.046 kb on - strand, within DvMF_0342 at 401.046 kb on - strand, within DvMF_0342 at 401.046 kb on - strand, within DvMF_0342 at 401.046 kb on - strand, within DvMF_0342 at 401.462 kb on - strand at 401.592 kb on + strand at 401.718 kb on - strand at 401.754 kb on + strand at 401.781 kb on - strand at 401.805 kb on + strand at 401.871 kb on - strand at 401.916 kb on - strand at 401.985 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml remove 398,844 - DvMF_0341 0.51 -0.6 398,871 + DvMF_0341 0.54 -0.0 398,916 + DvMF_0341 0.58 -0.2 398,924 - DvMF_0341 0.58 +0.2 398,924 - DvMF_0341 0.58 -0.7 398,976 - DvMF_0341 0.63 -0.3 399,015 - DvMF_0341 0.67 -0.2 399,072 - DvMF_0341 0.72 -0.7 399,105 + DvMF_0341 0.75 -0.3 399,133 + DvMF_0341 0.78 -0.0 399,166 + DvMF_0341 0.81 -0.6 399,174 - DvMF_0341 0.81 -0.5 399,290 + -0.4 399,332 + -0.1 399,340 - -0.3 399,619 + -0.4 399,766 + -0.2 399,872 + -0.4 400,037 + DvMF_0342 0.18 -1.8 400,037 + DvMF_0342 0.18 +0.3 400,037 + DvMF_0342 0.18 -0.0 400,045 - DvMF_0342 0.18 -0.3 400,045 - DvMF_0342 0.18 +0.3 400,440 + DvMF_0342 0.41 -0.7 400,459 + DvMF_0342 0.42 +0.5 400,550 + DvMF_0342 0.47 -0.3 400,586 - DvMF_0342 0.50 -0.4 400,680 + DvMF_0342 0.55 -0.7 400,718 + DvMF_0342 0.57 -0.4 400,918 - DvMF_0342 0.69 -0.0 401,038 + DvMF_0342 0.76 -0.5 401,046 - DvMF_0342 0.76 -0.3 401,046 - DvMF_0342 0.76 -0.3 401,046 - DvMF_0342 0.76 -0.1 401,046 - DvMF_0342 0.76 -0.2 401,462 - -0.1 401,592 + +0.1 401,718 - -0.7 401,754 + -0.4 401,781 - -0.2 401,805 + -0.2 401,871 - +0.2 401,916 - -0.3 401,985 + +0.9
Or see this region's nucleotide sequence