Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0274

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDvMF_0273 and DvMF_0274 are separated by 29 nucleotidesDvMF_0274 and DvMF_0275 are separated by 520 nucleotides DvMF_0273: DvMF_0273 - nickel-dependent hydrogenase large subunit (RefSeq), at 311,959 to 313,425 _0273 DvMF_0274: DvMF_0274 - hydrogenase (NiFe) small subunit HydA (RefSeq), at 313,455 to 314,408 _0274 DvMF_0275: DvMF_0275 - putative alpha-isopropylmalate/homocitrate synthase family transferase (RefSeq), at 314,929 to 316,551 _0275 Position (kb) 313 314 315Strain fitness (log2 ratio) -1 0 1at 312.540 kb on + strand, within DvMF_0273at 312.871 kb on - strand, within DvMF_0273at 312.924 kb on + strand, within DvMF_0273at 312.924 kb on + strand, within DvMF_0273at 312.932 kb on - strand, within DvMF_0273at 312.939 kb on + strand, within DvMF_0273at 313.199 kb on + strand, within DvMF_0273at 313.339 kb on + strandat 313.402 kb on + strandat 313.661 kb on + strand, within DvMF_0274at 313.705 kb on - strand, within DvMF_0274at 314.038 kb on + strand, within DvMF_0274at 314.098 kb on + strand, within DvMF_0274at 314.106 kb on - strand, within DvMF_0274at 314.256 kb on + strand, within DvMF_0274at 314.256 kb on + strand, within DvMF_0274at 314.929 kb on + strandat 315.394 kb on - strand, within DvMF_0275

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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312,540 + DvMF_0273 0.40 -0.2
312,871 - DvMF_0273 0.62 +0.5
312,924 + DvMF_0273 0.66 +0.7
312,924 + DvMF_0273 0.66 -0.2
312,932 - DvMF_0273 0.66 -0.5
312,939 + DvMF_0273 0.67 -0.3
313,199 + DvMF_0273 0.85 -0.0
313,339 + -0.0
313,402 + -0.0
313,661 + DvMF_0274 0.22 -0.8
313,705 - DvMF_0274 0.26 -0.4
314,038 + DvMF_0274 0.61 +0.5
314,098 + DvMF_0274 0.67 -0.4
314,106 - DvMF_0274 0.68 +0.4
314,256 + DvMF_0274 0.84 -0.5
314,256 + DvMF_0274 0.84 -0.2
314,929 + +0.1
315,394 - DvMF_0275 0.29 -0.1

Or see this region's nucleotide sequence