Strain Fitness in Desulfovibrio vulgaris Miyazaki F around DvMF_0112

Experiment: MoYLS4 with G418 0.125 mg/ml

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntclpX and DvMF_0112 are separated by 118 nucleotidesDvMF_0112 and DvMF_0113 are separated by 397 nucleotidesDvMF_0113 and DvMF_0114 are separated by 22 nucleotides DvMF_0111: clpX - ATP-dependent protease ATP-binding subunit ClpX (RefSeq), at 120,238 to 121,776 clpX DvMF_0112: DvMF_0112 - ATP-dependent protease La (RefSeq), at 121,895 to 124,357 _0112 DvMF_0113: DvMF_0113 - hypothetical protein (RefSeq), at 124,755 to 125,330 _0113 DvMF_0114: DvMF_0114 - hypothetical protein (RefSeq), at 125,353 to 125,619 _0114 Position (kb) 121 122 123 124 125Strain fitness (log2 ratio) -2 -1 0 1at 121.199 kb on + strand, within clpXat 121.982 kb on + strandat 122.203 kb on - strand, within DvMF_0112at 122.307 kb on - strand, within DvMF_0112at 122.336 kb on + strand, within DvMF_0112at 122.620 kb on + strand, within DvMF_0112at 122.628 kb on - strand, within DvMF_0112at 122.687 kb on - strand, within DvMF_0112at 123.265 kb on + strand, within DvMF_0112at 123.273 kb on - strand, within DvMF_0112at 123.375 kb on + strand, within DvMF_0112at 123.831 kb on - strand, within DvMF_0112at 124.375 kb on - strandat 124.789 kb on + strandat 124.854 kb on + strand, within DvMF_0113at 124.869 kb on - strand, within DvMF_0113at 125.031 kb on + strand, within DvMF_0113at 125.032 kb on + strand, within DvMF_0113at 125.035 kb on - strand, within DvMF_0113at 125.209 kb on - strand, within DvMF_0113at 125.270 kb on - strand, within DvMF_0113

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Per-strain Table

Position Strand Gene LocusTag Fraction MoYLS4 with G418 0.125 mg/ml
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121,199 + clpX DvMF_0111 0.62 -0.3
121,982 + -0.4
122,203 - DvMF_0112 0.13 -1.3
122,307 - DvMF_0112 0.17 -0.5
122,336 + DvMF_0112 0.18 -0.9
122,620 + DvMF_0112 0.29 -0.8
122,628 - DvMF_0112 0.30 -2.2
122,687 - DvMF_0112 0.32 -0.0
123,265 + DvMF_0112 0.56 -1.5
123,273 - DvMF_0112 0.56 -0.8
123,375 + DvMF_0112 0.60 -0.7
123,831 - DvMF_0112 0.79 -0.9
124,375 - -0.4
124,789 + -0.6
124,854 + DvMF_0113 0.17 -0.3
124,869 - DvMF_0113 0.20 -0.2
125,031 + DvMF_0113 0.48 -0.2
125,032 + DvMF_0113 0.48 -0.3
125,035 - DvMF_0113 0.49 +0.2
125,209 - DvMF_0113 0.79 +0.2
125,270 - DvMF_0113 0.89 -0.4

Or see this region's nucleotide sequence