Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_1980 and Sama_1981 are separated by 11 nucleotides Sama_1981 and Sama_1982 are separated by 57 nucleotides Sama_1982 and Sama_1983 are separated by 14 nucleotides
Sama_1980: Sama_1980 - 3-oxoacyl-(acyl-carrier-protein) reductase (RefSeq), at 2,408,589 to 2,409,335
_1980
Sama_1981: Sama_1981 - malonyl CoA-acyl carrier protein transacylase (RefSeq), at 2,409,347 to 2,410,273
_1981
Sama_1982: Sama_1982 - 3-oxoacyl-(acyl carrier protein) synthase III (RefSeq), at 2,410,331 to 2,411,290
_1982
Sama_1983: Sama_1983 - putative glycerol-3-phosphate acyltransferase PlsX (RefSeq), at 2,411,305 to 2,412,333
_1983
Position (kb)
2410
2411
2412 Strain fitness (log2 ratio)
-2
-1
0
1 at 2409.349 kb on - strand at 2409.375 kb on - strand at 2409.375 kb on - strand at 2410.496 kb on - strand, within Sama_1982 at 2410.496 kb on - strand, within Sama_1982 at 2410.535 kb on - strand, within Sama_1982 at 2410.537 kb on + strand, within Sama_1982 at 2410.753 kb on - strand, within Sama_1982 at 2411.321 kb on - strand at 2411.321 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 2,409,349 - +0.5 2,409,375 - -2.0 2,409,375 - -2.0 2,410,496 - Sama_1982 0.17 -1.1 2,410,496 - Sama_1982 0.17 +1.2 2,410,535 - Sama_1982 0.21 -2.2 2,410,537 + Sama_1982 0.21 -0.1 2,410,753 - Sama_1982 0.44 +0.4 2,411,321 - +0.2 2,411,321 - +0.5
Or see this region's nucleotide sequence