Strain Fitness in Shewanella amazonensis SB2B around Sama_1515

Experiment: Tween 20

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntSama_1514 and Sama_1515 are separated by 23 nucleotidesSama_1515 and Sama_1516 are separated by 29 nucleotides Sama_1514: Sama_1514 - SMC family protein (RefSeq), at 1,839,719 to 1,843,138 _1514 Sama_1515: Sama_1515 - cell division protein ZipA (RefSeq), at 1,843,162 to 1,844,214 _1515 Sama_1516: Sama_1516 - DNA ligase (NAD(+)) (RefSeq), at 1,844,244 to 1,846,289 _1516 Position (kb) 1843 1844 1845Strain fitness (log2 ratio) -2 -1 0 1at 1842.295 kb on - strand, within Sama_1514at 1842.363 kb on + strand, within Sama_1514at 1842.378 kb on + strand, within Sama_1514at 1842.378 kb on + strand, within Sama_1514at 1842.453 kb on + strand, within Sama_1514at 1842.453 kb on + strand, within Sama_1514at 1842.453 kb on + strand, within Sama_1514at 1842.554 kb on + strand, within Sama_1514at 1842.554 kb on + strand, within Sama_1514at 1842.581 kb on + strand, within Sama_1514at 1842.746 kb on + strand, within Sama_1514at 1842.746 kb on + strand, within Sama_1514at 1842.867 kb on + strandat 1843.003 kb on + strandat 1843.003 kb on + strandat 1843.005 kb on + strandat 1843.007 kb on + strandat 1843.021 kb on + strandat 1843.021 kb on + strandat 1843.026 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Tween 20
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1,842,295 - Sama_1514 0.75 -0.0
1,842,363 + Sama_1514 0.77 +0.5
1,842,378 + Sama_1514 0.78 -0.2
1,842,378 + Sama_1514 0.78 -0.0
1,842,453 + Sama_1514 0.80 +0.9
1,842,453 + Sama_1514 0.80 -0.7
1,842,453 + Sama_1514 0.80 +0.3
1,842,554 + Sama_1514 0.83 -1.6
1,842,554 + Sama_1514 0.83 -0.6
1,842,581 + Sama_1514 0.84 -0.9
1,842,746 + Sama_1514 0.89 +1.3
1,842,746 + Sama_1514 0.89 +0.1
1,842,867 + -0.4
1,843,003 + -0.8
1,843,003 + +1.1
1,843,005 + -2.0
1,843,007 + -0.4
1,843,021 + -1.1
1,843,021 + -0.5
1,843,026 + -0.5

Or see this region's nucleotide sequence