Experiment: Tween 20
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Sama_0669 and Sama_0670 are separated by 107 nucleotides Sama_0670 and Sama_0671 are separated by 62 nucleotides Sama_0671 and Sama_0672 are separated by 286 nucleotides
Sama_0669: Sama_0669 - gamma-glutamyltransferase (RefSeq), at 824,619 to 826,325
_0669
Sama_0670: Sama_0670 - melanin biosynthesis protein TyrA, putative (RefSeq), at 826,433 to 827,368
_0670
Sama_0671: Sama_0671 - arginine repressor (RefSeq), at 827,431 to 827,895
_0671
Sama_0672: Sama_0672 - malate dehydrogenase (RefSeq), at 828,182 to 829,117
_0672
Position (kb) 826
827
828 Strain fitness (log2 ratio) -5
-4
-3
-2
-1
0
1
2 at 825.433 kb on + strand, within Sama_0669 at 825.434 kb on - strand, within Sama_0669 at 825.484 kb on + strand, within Sama_0669 at 825.484 kb on + strand, within Sama_0669 at 825.484 kb on + strand, within Sama_0669 at 825.485 kb on - strand, within Sama_0669 at 825.555 kb on + strand, within Sama_0669 at 825.555 kb on + strand, within Sama_0669 at 825.555 kb on + strand, within Sama_0669 at 825.555 kb on + strand, within Sama_0669 at 825.556 kb on - strand, within Sama_0669 at 825.556 kb on - strand, within Sama_0669 at 825.556 kb on - strand, within Sama_0669 at 825.556 kb on - strand, within Sama_0669 at 825.578 kb on + strand, within Sama_0669 at 825.578 kb on + strand, within Sama_0669 at 825.578 kb on + strand, within Sama_0669 at 825.579 kb on - strand, within Sama_0669 at 825.612 kb on + strand, within Sama_0669 at 825.653 kb on + strand, within Sama_0669 at 825.654 kb on - strand, within Sama_0669 at 825.654 kb on - strand, within Sama_0669 at 825.654 kb on - strand, within Sama_0669 at 825.667 kb on - strand, within Sama_0669 at 825.691 kb on + strand, within Sama_0669 at 825.691 kb on + strand, within Sama_0669 at 825.756 kb on + strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.757 kb on - strand, within Sama_0669 at 825.782 kb on + strand, within Sama_0669 at 825.797 kb on + strand, within Sama_0669 at 825.797 kb on + strand, within Sama_0669 at 825.798 kb on - strand, within Sama_0669 at 825.798 kb on - strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.856 kb on + strand, within Sama_0669 at 825.857 kb on - strand, within Sama_0669 at 825.857 kb on - strand, within Sama_0669 at 825.857 kb on - strand, within Sama_0669 at 825.857 kb on - strand, within Sama_0669 at 826.038 kb on - strand, within Sama_0669 at 826.038 kb on - strand, within Sama_0669 at 826.088 kb on + strand, within Sama_0669 at 826.088 kb on + strand, within Sama_0669 at 826.088 kb on + strand, within Sama_0669 at 826.089 kb on - strand, within Sama_0669 at 826.143 kb on + strand, within Sama_0669 at 826.143 kb on + strand, within Sama_0669 at 826.143 kb on + strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.144 kb on - strand, within Sama_0669 at 826.275 kb on + strand at 826.276 kb on - strand at 826.320 kb on + strand at 826.321 kb on - strand at 826.323 kb on + strand at 826.324 kb on - strand at 826.324 kb on - strand at 826.324 kb on - strand at 826.332 kb on + strand at 826.332 kb on + strand at 826.332 kb on + strand at 826.333 kb on - strand at 826.349 kb on + strand at 826.350 kb on - strand at 826.380 kb on - strand at 826.384 kb on + strand at 826.385 kb on - strand at 826.411 kb on + strand at 826.412 kb on - strand at 826.412 kb on - strand at 826.418 kb on + strand at 826.426 kb on + strand at 826.427 kb on - strand at 826.427 kb on - strand at 826.430 kb on + strand at 826.430 kb on + strand at 826.430 kb on + strand at 826.430 kb on + strand at 826.431 kb on - strand at 826.431 kb on - strand at 826.431 kb on - strand at 826.431 kb on - strand at 826.431 kb on - strand at 826.432 kb on + strand at 826.432 kb on + strand at 826.432 kb on + strand at 826.433 kb on - strand at 826.438 kb on + strand at 826.447 kb on + strand at 826.470 kb on + strand at 826.471 kb on - strand at 826.568 kb on + strand, within Sama_0670 at 826.569 kb on - strand, within Sama_0670 at 826.574 kb on + strand, within Sama_0670 at 826.574 kb on + strand, within Sama_0670 at 826.574 kb on + strand, within Sama_0670 at 826.592 kb on + strand, within Sama_0670 at 826.592 kb on + strand, within Sama_0670 at 826.593 kb on - strand, within Sama_0670 at 826.609 kb on + strand, within Sama_0670 at 826.610 kb on - strand, within Sama_0670 at 826.610 kb on - strand, within Sama_0670 at 826.637 kb on + strand, within Sama_0670 at 826.638 kb on - strand, within Sama_0670 at 826.738 kb on - strand, within Sama_0670 at 826.738 kb on - strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.770 kb on + strand, within Sama_0670 at 826.771 kb on - strand, within Sama_0670 at 826.771 kb on - strand, within Sama_0670 at 826.852 kb on + strand, within Sama_0670 at 826.852 kb on + strand, within Sama_0670 at 826.967 kb on + strand, within Sama_0670 at 826.967 kb on + strand, within Sama_0670 at 826.967 kb on + strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.968 kb on - strand, within Sama_0670 at 826.977 kb on + strand, within Sama_0670 at 826.994 kb on - strand, within Sama_0670 at 827.058 kb on + strand, within Sama_0670 at 827.058 kb on + strand, within Sama_0670 at 827.059 kb on - strand, within Sama_0670 at 827.059 kb on - strand, within Sama_0670 at 827.059 kb on - strand, within Sama_0670 at 827.065 kb on + strand, within Sama_0670 at 827.072 kb on + strand, within Sama_0670 at 827.072 kb on + strand, within Sama_0670 at 827.073 kb on - strand, within Sama_0670 at 827.138 kb on - strand, within Sama_0670 at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.345 kb on + strand at 827.346 kb on - strand at 827.346 kb on - strand at 827.349 kb on + strand at 827.433 kb on - strand at 827.442 kb on - strand at 827.442 kb on - strand at 827.446 kb on - strand at 827.446 kb on - strand at 827.446 kb on - strand at 827.446 kb on - strand at 827.457 kb on + strand at 827.458 kb on - strand at 827.491 kb on - strand, within Sama_0671 at 827.533 kb on - strand, within Sama_0671 at 827.579 kb on - strand, within Sama_0671 at 827.582 kb on - strand, within Sama_0671 at 827.582 kb on - strand, within Sama_0671 at 827.605 kb on - strand, within Sama_0671 at 827.605 kb on - strand, within Sama_0671 at 827.615 kb on - strand, within Sama_0671 at 827.629 kb on - strand, within Sama_0671 at 827.629 kb on - strand, within Sama_0671 at 827.629 kb on - strand, within Sama_0671 at 827.703 kb on - strand, within Sama_0671 at 827.703 kb on - strand, within Sama_0671 at 827.735 kb on - strand, within Sama_0671 at 827.735 kb on - strand, within Sama_0671 at 827.735 kb on - strand, within Sama_0671 at 827.735 kb on - strand, within Sama_0671 at 827.749 kb on - strand, within Sama_0671 at 827.749 kb on - strand, within Sama_0671 at 827.782 kb on - strand, within Sama_0671 at 827.812 kb on - strand, within Sama_0671 at 827.812 kb on - strand, within Sama_0671 at 827.812 kb on - strand, within Sama_0671 at 827.812 kb on - strand, within Sama_0671 at 827.896 kb on - strand at 828.066 kb on + strand at 828.067 kb on - strand at 828.094 kb on + strand at 828.120 kb on + strand at 828.120 kb on + strand at 828.120 kb on + strand at 828.121 kb on - strand at 828.147 kb on - strand at 828.165 kb on + strand at 828.166 kb on - strand at 828.166 kb on - strand at 828.166 kb on - strand at 828.166 kb on - strand at 828.167 kb on + strand at 828.167 kb on + strand at 828.167 kb on + strand at 828.167 kb on + strand at 828.167 kb on + strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.168 kb on - strand at 828.177 kb on + strand at 828.177 kb on + strand at 828.177 kb on + strand at 828.177 kb on + strand at 828.177 kb on + strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.178 kb on - strand at 828.234 kb on + strand at 828.235 kb on - strand at 828.235 kb on - strand at 828.278 kb on + strand, within Sama_0672 at 828.278 kb on + strand, within Sama_0672
Per-strain Table
Position Strand Gene LocusTag Fraction Tween 20 remove 825,433 + Sama_0669 0.48 +0.5 825,434 - Sama_0669 0.48 -1.5 825,484 + Sama_0669 0.51 +0.0 825,484 + Sama_0669 0.51 -1.2 825,484 + Sama_0669 0.51 +1.8 825,485 - Sama_0669 0.51 -0.2 825,555 + Sama_0669 0.55 +1.5 825,555 + Sama_0669 0.55 +0.4 825,555 + Sama_0669 0.55 -0.6 825,555 + Sama_0669 0.55 +0.1 825,556 - Sama_0669 0.55 -0.3 825,556 - Sama_0669 0.55 +0.2 825,556 - Sama_0669 0.55 -0.1 825,556 - Sama_0669 0.55 +1.8 825,578 + Sama_0669 0.56 +0.4 825,578 + Sama_0669 0.56 -0.6 825,578 + Sama_0669 0.56 +0.3 825,579 - Sama_0669 0.56 -1.3 825,612 + Sama_0669 0.58 +0.2 825,653 + Sama_0669 0.61 +0.7 825,654 - Sama_0669 0.61 -1.5 825,654 - Sama_0669 0.61 -0.2 825,654 - Sama_0669 0.61 -0.4 825,667 - Sama_0669 0.61 -0.7 825,691 + Sama_0669 0.63 +0.7 825,691 + Sama_0669 0.63 -0.4 825,756 + Sama_0669 0.67 +0.3 825,757 - Sama_0669 0.67 +0.3 825,757 - Sama_0669 0.67 +0.8 825,757 - Sama_0669 0.67 -0.9 825,757 - Sama_0669 0.67 -1.1 825,757 - Sama_0669 0.67 +0.5 825,782 + Sama_0669 0.68 -0.2 825,797 + Sama_0669 0.69 +0.2 825,797 + Sama_0669 0.69 +0.4 825,798 - Sama_0669 0.69 -1.8 825,798 - Sama_0669 0.69 +0.0 825,856 + Sama_0669 0.72 -0.2 825,856 + Sama_0669 0.72 -0.8 825,856 + Sama_0669 0.72 +0.6 825,856 + Sama_0669 0.72 -0.4 825,856 + Sama_0669 0.72 -0.5 825,857 - Sama_0669 0.73 +0.1 825,857 - Sama_0669 0.73 -0.5 825,857 - Sama_0669 0.73 +0.8 825,857 - Sama_0669 0.73 -2.2 826,038 - Sama_0669 0.83 -0.5 826,038 - Sama_0669 0.83 +0.7 826,088 + Sama_0669 0.86 -0.2 826,088 + Sama_0669 0.86 +0.3 826,088 + Sama_0669 0.86 +0.5 826,089 - Sama_0669 0.86 -0.7 826,143 + Sama_0669 0.89 +0.2 826,143 + Sama_0669 0.89 +0.1 826,143 + Sama_0669 0.89 +0.2 826,144 - Sama_0669 0.89 +1.2 826,144 - Sama_0669 0.89 +0.6 826,144 - Sama_0669 0.89 +0.3 826,144 - Sama_0669 0.89 -1.8 826,144 - Sama_0669 0.89 -0.6 826,144 - Sama_0669 0.89 -0.9 826,144 - Sama_0669 0.89 -0.2 826,275 + +0.5 826,276 - +0.5 826,320 + -0.4 826,321 - -1.1 826,323 + -0.2 826,324 - -1.5 826,324 - +0.2 826,324 - +0.6 826,332 + +0.8 826,332 + +0.1 826,332 + -0.2 826,333 - +0.3 826,349 + +0.5 826,350 - -1.9 826,380 - -0.6 826,384 + +0.1 826,385 - -1.9 826,411 + -0.7 826,412 - -1.5 826,412 - -1.0 826,418 + -0.2 826,426 + -0.3 826,427 - +0.2 826,427 - -3.3 826,430 + -0.3 826,430 + -0.3 826,430 + +0.2 826,430 + -1.2 826,431 - -2.3 826,431 - -3.0 826,431 - -3.5 826,431 - -4.3 826,431 - -3.9 826,432 + -1.6 826,432 + -2.6 826,432 + -2.0 826,433 - -3.2 826,438 + -3.7 826,447 + -1.8 826,470 + -4.3 826,471 - -2.5 826,568 + Sama_0670 0.14 -2.3 826,569 - Sama_0670 0.15 -1.8 826,574 + Sama_0670 0.15 -3.3 826,574 + Sama_0670 0.15 -3.3 826,574 + Sama_0670 0.15 -2.3 826,592 + Sama_0670 0.17 -2.2 826,592 + Sama_0670 0.17 -2.3 826,593 - Sama_0670 0.17 -3.4 826,609 + Sama_0670 0.19 -4.1 826,610 - Sama_0670 0.19 -1.8 826,610 - Sama_0670 0.19 -1.5 826,637 + Sama_0670 0.22 -2.3 826,638 - Sama_0670 0.22 -3.0 826,738 - Sama_0670 0.33 -0.8 826,738 - Sama_0670 0.33 -2.5 826,770 + Sama_0670 0.36 -3.0 826,770 + Sama_0670 0.36 -2.6 826,770 + Sama_0670 0.36 -2.2 826,770 + Sama_0670 0.36 -2.8 826,770 + Sama_0670 0.36 -3.1 826,771 - Sama_0670 0.36 -3.1 826,771 - Sama_0670 0.36 -3.3 826,852 + Sama_0670 0.45 -3.1 826,852 + Sama_0670 0.45 -2.0 826,967 + Sama_0670 0.57 -4.2 826,967 + Sama_0670 0.57 -2.0 826,967 + Sama_0670 0.57 -4.1 826,968 - Sama_0670 0.57 -2.2 826,968 - Sama_0670 0.57 -3.3 826,968 - Sama_0670 0.57 -4.1 826,968 - Sama_0670 0.57 -2.3 826,968 - Sama_0670 0.57 -3.8 826,968 - Sama_0670 0.57 -3.8 826,968 - Sama_0670 0.57 -3.6 826,968 - Sama_0670 0.57 -1.2 826,977 + Sama_0670 0.58 -4.4 826,994 - Sama_0670 0.60 -1.8 827,058 + Sama_0670 0.67 -2.5 827,058 + Sama_0670 0.67 -2.2 827,059 - Sama_0670 0.67 -1.2 827,059 - Sama_0670 0.67 -2.5 827,059 - Sama_0670 0.67 -2.9 827,065 + Sama_0670 0.68 -4.0 827,072 + Sama_0670 0.68 -3.8 827,072 + Sama_0670 0.68 -2.3 827,073 - Sama_0670 0.68 -3.1 827,138 - Sama_0670 0.75 -2.3 827,345 + -3.7 827,345 + -2.0 827,345 + -2.5 827,345 + -3.2 827,346 - -1.8 827,346 - -4.1 827,349 + -0.5 827,433 - +0.6 827,442 - +1.2 827,442 - -0.9 827,446 - +0.9 827,446 - +0.8 827,446 - +0.6 827,446 - +0.8 827,457 + -1.8 827,458 - +0.8 827,491 - Sama_0671 0.13 -1.2 827,533 - Sama_0671 0.22 -0.0 827,579 - Sama_0671 0.32 +1.9 827,582 - Sama_0671 0.32 +0.7 827,582 - Sama_0671 0.32 +1.9 827,605 - Sama_0671 0.37 +0.4 827,605 - Sama_0671 0.37 +1.1 827,615 - Sama_0671 0.40 -0.2 827,629 - Sama_0671 0.43 -0.0 827,629 - Sama_0671 0.43 +1.4 827,629 - Sama_0671 0.43 +0.6 827,703 - Sama_0671 0.58 -0.9 827,703 - Sama_0671 0.58 +0.7 827,735 - Sama_0671 0.65 +0.1 827,735 - Sama_0671 0.65 +0.2 827,735 - Sama_0671 0.65 +0.4 827,735 - Sama_0671 0.65 +0.4 827,749 - Sama_0671 0.68 +0.6 827,749 - Sama_0671 0.68 +0.7 827,782 - Sama_0671 0.75 +0.7 827,812 - Sama_0671 0.82 -0.5 827,812 - Sama_0671 0.82 -0.8 827,812 - Sama_0671 0.82 -0.6 827,812 - Sama_0671 0.82 +0.3 827,896 - +0.4 828,066 + +0.5 828,067 - +0.2 828,094 + +1.4 828,120 + -0.8 828,120 + -0.2 828,120 + -1.5 828,121 - -4.5 828,147 - -3.2 828,165 + -0.6 828,166 - -3.8 828,166 - -3.9 828,166 - -1.8 828,166 - -3.9 828,167 + -0.4 828,167 + -1.4 828,167 + -1.6 828,167 + -1.1 828,167 + +0.5 828,168 - -2.6 828,168 - -3.0 828,168 - -3.0 828,168 - -4.4 828,168 - -3.8 828,168 - -1.4 828,177 + -3.5 828,177 + -4.8 828,177 + -1.5 828,177 + -3.9 828,177 + -1.8 828,178 - -2.8 828,178 - -2.8 828,178 - -1.5 828,178 - -0.8 828,178 - -3.6 828,178 - -3.9 828,178 - -4.1 828,178 - +0.0 828,178 - -4.8 828,234 + -4.0 828,235 - -3.8 828,235 - -2.4 828,278 + Sama_0672 0.10 -2.1 828,278 + Sama_0672 0.10 -1.8
Or see this region's nucleotide sequence