Strain Fitness in Shewanella loihica PV-4 around Shew_3626

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3625 and Shew_3626 are separated by 302 nucleotidesShew_3626 and Shew_3627 overlap by 4 nucleotidesShew_3627 and Shew_3628 are separated by 156 nucleotidesShew_3628 and Shew_3629 overlap by 7 nucleotides Shew_3625: Shew_3625 - sodium:dicarboxylate symporter (RefSeq), at 4,324,508 to 4,325,734 _3625 Shew_3626: Shew_3626 - hypothetical protein (RefSeq), at 4,326,037 to 4,326,462 _3626 Shew_3627: Shew_3627 - XRE family transcriptional regulator (RefSeq), at 4,326,459 to 4,326,656 _3627 Shew_3628: Shew_3628 - MgtC/SapB transporter (RefSeq), at 4,326,813 to 4,327,295 _3628 Shew_3629: Shew_3629 - competence protein ComF (RefSeq), at 4,327,289 to 4,328,047 _3629 Position (kb) 4326 4327Strain fitness (log2 ratio) -1 0 1 2at 4325.160 kb on + strand, within Shew_3625at 4325.293 kb on + strand, within Shew_3625at 4325.366 kb on + strand, within Shew_3625at 4325.804 kb on - strandat 4325.918 kb on - strandat 4326.070 kb on - strandat 4326.121 kb on - strand, within Shew_3626at 4326.163 kb on + strand, within Shew_3626at 4326.266 kb on + strand, within Shew_3626at 4326.651 kb on + strandat 4326.917 kb on - strand, within Shew_3628at 4326.969 kb on - strand, within Shew_3628at 4327.073 kb on + strand, within Shew_3628

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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4,325,160 + Shew_3625 0.53 +0.6
4,325,293 + Shew_3625 0.64 -0.1
4,325,366 + Shew_3625 0.70 +1.8
4,325,804 - +0.1
4,325,918 - -0.2
4,326,070 - +0.7
4,326,121 - Shew_3626 0.20 +1.3
4,326,163 + Shew_3626 0.30 +0.8
4,326,266 + Shew_3626 0.54 +0.1
4,326,651 + -1.1
4,326,917 - Shew_3628 0.22 -0.2
4,326,969 - Shew_3628 0.32 +1.3
4,327,073 + Shew_3628 0.54 -0.3

Or see this region's nucleotide sequence