Strain Fitness in Shewanella loihica PV-4 around Shew_3616

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_3613 and Shew_3614 overlap by 20 nucleotidesShew_3614 and Shew_3615 overlap by 8 nucleotidesShew_3615 and Shew_3616 are separated by 20 nucleotidesShew_3616 and Shew_3617 are separated by 71 nucleotides Shew_3613: Shew_3613 - general secretion pathway protein J (RefSeq), at 4,310,779 to 4,311,558 _3613 Shew_3614: Shew_3614 - general secretion pathway protein I (RefSeq), at 4,311,539 to 4,311,943 _3614 Shew_3615: Shew_3615 - general secretion pathway protein H (RefSeq), at 4,311,936 to 4,312,514 _3615 Shew_3616: Shew_3616 - general secretion pathway protein G (RefSeq), at 4,312,535 to 4,312,969 _3616 Shew_3617: Shew_3617 - general secretion pathway protein F (RefSeq), at 4,313,041 to 4,314,261 _3617 Position (kb) 4312 4313Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 4311.574 kb on - strandat 4311.824 kb on - strand, within Shew_3614at 4311.930 kb on - strandat 4311.973 kb on - strandat 4311.975 kb on + strandat 4311.975 kb on + strandat 4311.983 kb on - strandat 4311.983 kb on - strandat 4312.409 kb on - strand, within Shew_3615at 4312.526 kb on + strandat 4312.534 kb on - strandat 4312.625 kb on - strand, within Shew_3616at 4312.975 kb on - strandat 4313.153 kb on - strandat 4313.153 kb on - strandat 4313.301 kb on + strand, within Shew_3617at 4313.594 kb on - strand, within Shew_3617at 4313.817 kb on - strand, within Shew_3617

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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4,311,574 - -0.1
4,311,824 - Shew_3614 0.70 -2.8
4,311,930 - +1.0
4,311,973 - +1.5
4,311,975 + -1.9
4,311,975 + -3.4
4,311,983 - -1.0
4,311,983 - -0.3
4,312,409 - Shew_3615 0.82 -1.5
4,312,526 + +0.5
4,312,534 - -0.0
4,312,625 - Shew_3616 0.21 -0.7
4,312,975 - -2.8
4,313,153 - -2.4
4,313,153 - -1.7
4,313,301 + Shew_3617 0.21 -1.5
4,313,594 - Shew_3617 0.45 -4.0
4,313,817 - Shew_3617 0.64 -0.1

Or see this region's nucleotide sequence