Strain Fitness in Shewanella loihica PV-4 around Shew_2537

Experiment: Cobalt chloride 0.04 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntShew_2535 and Shew_2536 are separated by 40 nucleotidesShew_2536 and Shew_2537 are separated by 307 nucleotidesShew_2537 and Shew_2538 are separated by 216 nucleotidesShew_2538 and Shew_2539 overlap by 4 nucleotides Shew_2535: Shew_2535 - pyridoxal-dependent decarboxylase (RefSeq), at 2,992,865 to 2,994,505 _2535 Shew_2536: Shew_2536 - putative thiol-disulphide oxidoreductase DCC (RefSeq), at 2,994,546 to 2,995,016 _2536 Shew_2537: Shew_2537 - AraC family transcriptional regulator (RefSeq), at 2,995,324 to 2,996,262 _2537 Shew_2538: Shew_2538 - AzlC family protein (RefSeq), at 2,996,479 to 2,997,216 _2538 Shew_2539: Shew_2539 - branched-chain amino acid transport (RefSeq), at 2,997,213 to 2,997,518 _2539 Position (kb) 2995 2996 2997Strain fitness (log2 ratio) -2 -1 0 1 2 3at 2994.378 kb on + strandat 2994.655 kb on + strand, within Shew_2536at 2994.737 kb on + strand, within Shew_2536at 2994.958 kb on + strand, within Shew_2536at 2995.031 kb on + strandat 2995.127 kb on - strandat 2995.157 kb on + strandat 2995.435 kb on - strand, within Shew_2537at 2995.519 kb on - strand, within Shew_2537at 2995.668 kb on - strand, within Shew_2537at 2996.405 kb on - strandat 2996.748 kb on + strand, within Shew_2538at 2996.804 kb on - strand, within Shew_2538at 2996.960 kb on + strand, within Shew_2538at 2997.043 kb on - strand, within Shew_2538at 2997.086 kb on + strand, within Shew_2538at 2997.148 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Cobalt chloride 0.04 mM
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2,994,378 + +3.0
2,994,655 + Shew_2536 0.23 -0.0
2,994,737 + Shew_2536 0.41 +1.2
2,994,958 + Shew_2536 0.87 +1.6
2,995,031 + +0.1
2,995,127 - -2.6
2,995,157 + +0.3
2,995,435 - Shew_2537 0.12 -0.9
2,995,519 - Shew_2537 0.21 -0.6
2,995,668 - Shew_2537 0.37 -0.2
2,996,405 - -0.8
2,996,748 + Shew_2538 0.36 -0.4
2,996,804 - Shew_2538 0.44 +0.1
2,996,960 + Shew_2538 0.65 +0.2
2,997,043 - Shew_2538 0.76 +0.5
2,997,086 + Shew_2538 0.82 -1.3
2,997,148 + +0.5

Or see this region's nucleotide sequence